RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 CAGE1Q8TC20 777 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 P3H4Q92791 437 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.8■□□□□ 0.92
SMPD1-201ENST00000342245 FLT4P35916 1363 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 PES1O00541 588 aaKnown RBP20.8■□□□□ 0.92
SMPD1-201ENST00000342245 GYPCP04921 128 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 SLMAPQ14BN4 828 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.8■□□□□ 0.92
SMPD1-201ENST00000342245 CAVIN3Q969G5 261 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 RABEP2Q9H5N1 569 aa20.8■□□□□ 0.92
SMPD1-201ENST00000342245 CPLX1O14810 134 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 TEFQ10587 303 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 C6orf89Q6UWU4 347 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 FAM43BQ6ZT52 329 aaPredicted RBP20.79■□□□□ 0.92
SMPD1-201ENST00000342245 NBPF5PQ86XG9 351 aaPredicted RBP20.79■□□□□ 0.92
SMPD1-201ENST00000342245 UTYO14607 1347 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 PPP1R37O75864 691 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 FAM107AO95990 144 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 MYBL2P10244 700 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 CEBPAP49715 358 aaPredicted RBP20.79■□□□□ 0.92
SMPD1-201ENST00000342245 ERVK-24P63145 666 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 ATP2B2Q01814 1243 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 NAA25Q14CX7 972 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 CCDC129Q6ZRS4 1044 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 FUKQ8N0W3 1084 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 GDAP1L1Q96MZ0 367 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 MAP3K14Q99558 947 aa20.79■□□□□ 0.92
SMPD1-201ENST00000342245 UBR1Q8IWV7 1749 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 TNFRSF8P28908 595 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 PTGISQ16647 500 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 SLC9C2Q5TAH2 1124 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 CDKAL1Q5VV42 579 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 TRMT44Q8IYL2 757 aaKnown RBP20.78■□□□□ 0.92
SMPD1-201ENST00000342245 KRI1Q8N9T8 703 aaKnown RBP20.78■□□□□ 0.92
SMPD1-201ENST00000342245 TTMPQ5BVD1 217 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 NLRP14Q86W24 1093 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 JAKMIP2Q96AA8 810 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 CHPF2Q9P2E5 772 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 GUCA1BQ9UMX6 200 aa20.78■□□□□ 0.92
SMPD1-201ENST00000342245 IQSEC3Q9UPP2 1182 aaPredicted RBP20.78■□□□□ 0.92
SMPD1-201ENST00000342245 EPN1Q9Y6I3 576 aaPredicted RBP20.78■□□□□ 0.92
SMPD1-201ENST00000342245 SLIT1O75093 1534 aa20.77■□□□□ 0.92
SMPD1-201ENST00000342245 GCKP35557 465 aa20.77■□□□□ 0.92
SMPD1-201ENST00000342245 FXR1P51114 621 aaKnown RBP eCLIP20.77■□□□□ 0.92
SMPD1-201ENST00000342245 PLPPR3Q6T4P5 718 aa20.77■□□□□ 0.92
SMPD1-201ENST00000342245 IL17REQ8NFR9 667 aa20.77■□□□□ 0.92
SMPD1-201ENST00000342245 CCDC26Q8TAB7 109 aa20.77■□□□□ 0.92
SMPD1-201ENST00000342245 PLEKHG3A1L390 1219 aa20.77■□□□□ 0.91
SMPD1-201ENST00000342245 RBBP5Q15291 538 aaKnown RBP20.77■□□□□ 0.91
SMPD1-201ENST00000342245 ZNF572Q7Z3I7 529 aaPredicted RBP20.77■□□□□ 0.91
SMPD1-201ENST00000342245 TCP11Q8WWU5 503 aa20.77■□□□□ 0.91
SMPD1-201ENST00000342245 CCT8L2Q96SF2 557 aa20.77■□□□□ 0.91
SMPD1-201ENST00000342245 HAUS7Q99871 368 aa20.77■□□□□ 0.91
SMPD1-201ENST00000342245 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.77■□□□□ 0.91
SMPD1-201ENST00000342245 DIP2AQ14689 1571 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 NDUFA10O95299 355 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 ATP1A1P05023 1023 aaKnown RBP20.76■□□□□ 0.91
SMPD1-201ENST00000342245 KRT83P78385 493 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 TRAF1Q13077 416 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 FNBP4Q8N3X1 1017 aaPredicted RBP20.76■□□□□ 0.91
SMPD1-201ENST00000342245 MYCBPAPQ8TBZ2 947 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 SLF1Q9BQI6 1058 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 ANKRD18BA2A2Z9 1011 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 ABL1P00519 1130 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 EIF2S2P20042 333 aaKnown RBP20.76■□□□□ 0.91
SMPD1-201ENST00000342245 IFT88Q13099 833 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 SPATA20Q8TB22 786 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 SYNRGQ9UMZ2 1314 aa20.76■□□□□ 0.91
SMPD1-201ENST00000342245 KIF13AQ9H1H9 1805 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 USP6P35125 1406 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 PTPRUQ92729 1446 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 PALLDQ8WX93 1383 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 KRT86O43790 486 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 CDCA2Q69YH5 1023 aaPredicted RBP20.75■□□□□ 0.91
SMPD1-201ENST00000342245 PPP4R3AQ6IN85 833 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.75■□□□□ 0.91
SMPD1-201ENST00000342245 FAM228AQ86W67 206 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 VPS37DQ86XT2 251 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 GSPT2Q8IYD1 628 aaKnown RBP20.75■□□□□ 0.91
SMPD1-201ENST00000342245 ZMYND10O75800 440 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 CDKL5O76039 1030 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 PIP4K2AP48426 406 aaPredicted RBP20.75■□□□□ 0.91
SMPD1-201ENST00000342245 CD302Q8IX05 232 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 KBTBD3Q8NAB2 608 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 ARL8AQ96BM9 186 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 MED15Q96RN5 788 aa20.75■□□□□ 0.91
SMPD1-201ENST00000342245 TPX2Q9ULW0 747 aaKnown RBP20.75■□□□□ 0.91
SMPD1-201ENST00000342245 GRM8O00222 908 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 MPHOSPH10O00566 681 aaKnown RBP20.74■□□□□ 0.91
SMPD1-201ENST00000342245 SPAG1Q07617 926 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 ARMC9Q7Z3E5 817 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 ARFGAP2Q8N6H7 521 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 SAAL1Q96ER3 474 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 EYA1Q99502 592 aa20.74■□□□□ 0.91
SMPD1-201ENST00000342245 NUP88Q99567 741 aaPredicted RBP20.74■□□□□ 0.91
SMPD1-201ENST00000342245 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.74■□□□□ 0.91
SMPD1-201ENST00000342245 PPFIA3O75145 1194 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 PDHBP11177 359 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 XRCC4Q13426 336 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 WASHC4Q2M389 1173 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms