RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LMNB1P20700 586 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 SYCP2LQ5T4T6 812 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CDK5RAP3Q96JB5 506 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 HMG20BQ9P0W2 317 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 RGPD3A6NKT7 1758 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 RGPD4Q7Z3J3 1758 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC65Q8IXS2 484 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 GPT2Q8TD30 523 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 SUGCTQ9HAC7 445 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MARF1Q9Y4F3 1742 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 YLPM1P49750 1951 aaKnown RBP3.96□□□□□ -1.78
SYNE1-201ENST00000341594 MED12LQ86YW9 2145 aa3.96□□□□□ -1.78
SYNE1-201ENST00000341594 FOSL1P15407 271 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 FAM208AQ9UK61 1670 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TANGO6Q9C0B7 1094 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MSH6P52701 1360 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 LRRC10BA6NIK2 292 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ATF7IPQ6VMQ6 1270 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 DCLK2Q8N568 766 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PPANQ9NQ55 473 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 STK38Q15208 465 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SOGA3Q5TF21 947 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TTC41PQ6P2S7 1318 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 DIDO1Q9BTC0 2240 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 EFCAB6Q5THR3 1501 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 KIAA1551Q9HCM1 1747 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SLU7O95391 586 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SMARCC1Q92922 1105 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PRRC2BQ5JSZ5 2229 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ATN1P54259 1190 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PPP2R5AQ15172 486 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 INF2Q27J81 1249 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ANLNQ9NQW6 1124 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PIK3R2O00459 728 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PPP2R1AP30153 589 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CUL4AQ13619 759 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 RAVER1Q8IY67 606 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF594Q96JF6 807 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TIAM2Q8IVF5 1701 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TRAF1Q13077 416 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 EMC10Q5UCC4 262 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CEP112Q8N8E3 955 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CDC37Q16543 378 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 DDX60Q8IY21 1712 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 FBXW10Q5XX13 1052 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PRC1O43663 620 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 NLRP6P59044 892 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 GTF3C1Q12789 2109 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 FBXL16Q8N461 479 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ANKS4BQ8N8V4 417 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 FSIP1Q8NA03 581 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CDC25AP30304 524 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SATB1Q01826 763 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 AACSQ86V21 672 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 NBPF15Q8N660 670 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 GOLGA1Q92805 767 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 NAA16Q6N069 864 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MMS22LQ6ZRQ5 1243 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CD248Q9HCU0 757 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CABP1Q9NZU7 370 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SYCP2Q9BX26 1530 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CAPN7Q9Y6W3 813 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 NUP98P52948 1817 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SMC1AQ14683 1233 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF662Q6ZS27 426 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MAGI3Q5TCQ9 1506 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 PHLPP2Q6ZVD8 1323 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TRMT44Q8IYL2 757 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ARHGAP18Q8N392 663 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC155Q8N6L0 562 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ARMC2Q8NEN0 867 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 YARS2Q9Y2Z4 477 aaKnown RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF365Q70YC5 407 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ANO10Q9NW15 660 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MADDQ8WXG6 1647 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TRPM2O94759 1503 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SUPT3HO75486 399 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 WDHD1O75717 1129 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 GSCP56915 257 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 NLRP5P59047 1200 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 HOOK3Q86VS8 718 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MRGBPQ9NV56 204 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TCEAL9Q9UHQ7 104 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 SLC4A4Q9Y6R1 1079 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 ECM29Q5VYK3 1845 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CXCR5P32302 372 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 GNAI1P63096 354 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 TTLL12Q14166 644 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 CRELD2Q6UXH1 353 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-201ENST00000341594 MAATS1Q7Z4T9 603 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 UGGT1Q9NYU2 1555 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 EVA1CP58658 441 aa3.95□□□□□ -1.78
SYNE1-201ENST00000341594 OPA1O60313 960 aa3.94□□□□□ -1.78
SYNE1-201ENST00000341594 LRRC23Q53EV4 343 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-201ENST00000341594 TXNDC2Q86VQ3 553 aa3.94□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF710Q8N1W2 664 aa3.94□□□□□ -1.78
SYNE1-201ENST00000341594 NRDE2Q9H7Z3 1164 aa3.94□□□□□ -1.78
SYNE1-201ENST00000341594 CD109Q6YHK3 1445 aa3.94□□□□□ -1.78
SYNE1-201ENST00000341594 NONOQ15233 471 aaKnown RBP eCLIP3.94□□□□□ -1.78
SYNE1-201ENST00000341594 WHAMMP3Q1A5X7 153 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms