RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 TFR2Q9UP52 801 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 MRFAP1Q9Y605 127 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 TBC1D8O95759 1140 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 NLRP5P59047 1200 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 PTGDRQ13258 359 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 ESR2Q92731 530 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 PODXL2Q9NZ53 605 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 GUCA1BQ9UMX6 200 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 TNS3Q68CZ2 1445 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 USP54Q70EL1 1684 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 MAGEB6P1A0A0J9YX57 407 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 VGLL3A8MV65 326 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 CATIPQ7Z7H3 387 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 SLC35F6Q8N357 371 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 CARD10Q9BWT7 1032 aa16.34■□□□□ 0.21
CPSF7-201ENST00000340437 SOS2Q07890 1332 aaPredicted RBP16.34■□□□□ 0.21
CPSF7-201ENST00000340437 TUBB4AP04350 444 aa16.33■□□□□ 0.21
CPSF7-201ENST00000340437 KCNJ6P48051 423 aa16.33■□□□□ 0.21
CPSF7-201ENST00000340437 NR1I3Q14994 352 aa16.33■□□□□ 0.21
CPSF7-201ENST00000340437 JAKMIP3Q5VZ66 844 aa16.33■□□□□ 0.21
CPSF7-201ENST00000340437 GPR161Q8N6U8 529 aaKnown RBP16.33■□□□□ 0.21
CPSF7-201ENST00000340437 PLA2G12BQ9BX93 195 aa16.33■□□□□ 0.21
CPSF7-201ENST00000340437 ARID4AP29374 1257 aaPredicted RBP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 FXR1P51114 621 aaKnown RBP eCLIP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 CCDC102AQ96A19 550 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 GOLGA6L9A6NEM1 432 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 ZNF18P17022 549 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 TBX2Q13207 712 aaPredicted RBP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 LONRF2Q1L5Z9 754 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 FAM182BQ5T319 152 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 KANK3Q6NY19 840 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 RASGRP4Q8TDF6 673 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 PCMTD1Q96MG8 357 aaPredicted RBP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 RNF41Q9H4P4 317 aaPredicted RBP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 BRMS1Q9HCU9 246 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 VPS18Q9P253 973 aa16.33■□□□□ 0.2
CPSF7-201ENST00000340437 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.2
CPSF7-201ENST00000340437 MST1RQ04912 1400 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 NWD2Q9ULI1 1742 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 ENC1O14682 589 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 ZRANB2O95218 330 aaKnown RBP eCLIP16.32■□□□□ 0.2
CPSF7-201ENST00000340437 CYP19A1P11511 503 aaPredicted RBP16.32■□□□□ 0.2
CPSF7-201ENST00000340437 VEGFAP15692 232 aaPredicted RBP16.32■□□□□ 0.2
CPSF7-201ENST00000340437 SPATA1Q5VX52 437 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 ADGRG1Q9Y653 693 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 CAPZA3Q96KX2 299 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 PDE11AQ9HCR9 933 aa16.32■□□□□ 0.2
CPSF7-201ENST00000340437 RAD21O60216 631 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 ERCC3P19447 782 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 TTC38Q5R3I4 469 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 CALCOCO1Q9P1Z2 691 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 TRIM10Q9UDY6 481 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 CHRNDQ07001 517 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 DPYDQ12882 1025 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 ENAHQ8N8S7 591 aaPredicted RBP16.31■□□□□ 0.2
CPSF7-201ENST00000340437 SHISA4Q96DD7 197 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 MROH5Q6ZUA9 1318 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 USP17L12C9JPN9 530 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 USP17L21D6R901 530 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 UBXN1Q04323 297 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 CUL4BQ13620 913 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 FCHSD1Q86WN1 690 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 IQCA1Q86XH1 822 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 TICAM2Q86XR7 235 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 KIFC2Q96AC6 838 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 GDAQ9Y2T3 454 aa16.31■□□□□ 0.2
CPSF7-201ENST00000340437 TMTC2Q8N394 836 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 STAG1Q8WVM7 1258 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 CTAGE9A4FU28 777 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 CYP2C19P33261 490 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 KRT9P35527 623 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 TXLNAP40222 546 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 SARSP49591 514 aaKnown RBP16.3■□□□□ 0.2
CPSF7-201ENST00000340437 GPS2Q13227 327 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 NCAPH2Q6IBW4 605 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 GPKOWQ92917 476 aaPredicted RBP eCLIP16.3■□□□□ 0.23e-7■■■■□ 21.6
CPSF7-201ENST00000340437 ZSCAN10Q96SZ4 725 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-201ENST00000340437 MYH15Q9Y2K3 1946 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 A0A1B0GTH6 734 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 TRIM49BA6NDI0 452 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 RNF225M0QZC1 329 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-201ENST00000340437 FAM193AP78312 1265 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 RGS22Q8NE09 1264 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 FAM53CQ9NYF3 392 aa16.3■□□□□ 0.2
CPSF7-201ENST00000340437 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.3■□□□□ 0.2
CPSF7-201ENST00000340437 ABCC12Q96J65 1359 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 N4BP1O75113 896 aaKnown RBP16.29■□□□□ 0.2
CPSF7-201ENST00000340437 ATP6V1AP38606 617 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 TNNT3P45378 269 aaPredicted RBP16.29■□□□□ 0.2
CPSF7-201ENST00000340437 NKX1-1Q15270 411 aaPredicted RBP16.29■□□□□ 0.2
CPSF7-201ENST00000340437 TAF3Q5VWG9 929 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 AATFQ9NY61 560 aaKnown RBP eCLIP16.29■□□□□ 0.2
CPSF7-201ENST00000340437 ADAMTS3O15072 1205 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 ZMYND10O75800 440 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 KRT31Q15323 416 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 ALX1Q15699 326 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 CTCFLQ8NI51 663 aaPredicted RBP16.29■□□□□ 0.2
CPSF7-201ENST00000340437 FAM237AA0A1B0GTK4 181 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 ANKRD20A12PQ8NF67 263 aa16.29■□□□□ 0.2
CPSF7-201ENST00000340437 RABGGTAQ92696 567 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms