RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DRC1Q96MC2 740 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.44□□□□□ -0.583e-7■■■■□ 23.4
CCDC88A-202ENST00000336838 ABCD1P33897 745 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 ME3Q16798 604 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 EXOC4Q96A65 974 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 TMX1Q9H3N1 280 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 ARPP21Q9UBL0 812 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 MTMR6Q9Y217 621 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 NLRP1Q9C000 1473 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 KIF3CO14782 793 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 GSPT1P15170 499 aaKnown RBP11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 SFMBT2Q5VUG0 894 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 TPTE2Q6XPS3 522 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 AFAP1L2Q8N4X5 818 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 WDR19Q8NEZ3 1342 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 IRS4O14654 1257 aaPredicted RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 NOL3O60936 208 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 LGSNQ5TDP6 509 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 CCDC62Q6P9F0 684 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 XPO4Q9C0E2 1151 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 hCG_1984214I3L0E3 225 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 DDAH1O94760 285 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 CCT6AP40227 531 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 ZNF713Q8N859 430 aaPredicted RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 IPO4Q8TEX9 1081 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 SCLT1Q96NL6 688 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 TACO1Q9BSH4 297 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 HOMER3Q9NSC5 361 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 ATG3Q9NT62 314 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 MCM9Q9NXL9 1143 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 PA2G4Q9UQ80 394 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 CNGA1P29973 690 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 EFCAB13Q8IY85 973 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 SELENOSQ9BQE4 189 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 FOXP1Q9H334 677 aaPredicted RBP11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 KRT9P35527 623 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 AK8Q96MA6 479 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 TXNDC16Q9P2K2 825 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 NEXMIFQ5QGS0 1516 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 DLC1Q96QB1 1528 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 ERVV-2B6SEH9 535 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 E7EWF7 191 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 TRAF5O00463 557 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 MXRA7P84157 204 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 NFATC2IPQ8NCF5 419 aa11.43□□□□□ -0.58
CCDC88A-202ENST00000336838 CWF19L2Q2TBE0 894 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 GRK7Q8WTQ7 553 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 NELFBQ8WX92 580 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 TYW1Q9NV66 732 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 PDE8AO60658 829 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 INF2Q27J81 1249 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 WDR44Q5JSH3 913 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 DIS3L2Q8IYB7 885 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 LONP1P36776 959 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 FNBP4Q8N3X1 1017 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 FAM81BQ96LP2 452 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 HAUS2Q9NVX0 235 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 NCBP1Q09161 790 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 RPS6KA1Q15418 735 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 KRT40Q6A162 431 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 SARM1Q6SZW1 724 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 PAXIP1Q6ZW49 1069 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 PPP2R2CQ9Y2T4 447 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 CARMIL3Q8ND23 1372 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 U2AF2P26368 475 aaKnown RBP eCLIP11.42□□□□□ -0.585e-7■■■■□ 23.2
CCDC88A-202ENST00000336838 RAPGEF1Q13905 1077 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 HYOU1Q9Y4L1 999 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 GADD45BO75293 160 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 SETSIPP0DME0 302 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 GKAP1Q5VSY0 366 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 TMEM2Q9UHN6 1383 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 EIF3CLB5ME19 914 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 TBC1D22AQ8WUA7 517 aa11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 EIF3CQ99613 913 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-202ENST00000336838 SEMA3EO15041 775 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 NR1I2O75469 434 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 RFC4P35249 363 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 SEPT6Q14141 434 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 BBOF1Q8ND07 529 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 MRVI1Q9Y6F6 885 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 ABCC12Q96J65 1359 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 PHACTR2O75167 634 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 PDE4DQ08499 809 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 SPATA1Q5VX52 437 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 XAGE2Q96GT9 111 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 EYA3Q99504 573 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 CNOT10Q9H9A5 744 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 PNMA6EA0A0J9YXQ4 647 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 PABPN1LA6NDY0 278 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 MBD4O95243 580 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 REXO1Q8N1G1 1221 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 CARD6Q9BX69 1037 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 GTPBP6O43824 516 aaPredicted RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 RCAN1P53805 252 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 MAP4K1Q92918 833 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 COPRSQ9NQ92 184 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 KCNJ18B7U540 433 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 H0YCG3 227 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 STK10O94804 968 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 GCP02774 474 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms