RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TYW1BQ6NUM6 668 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 MMS19Q96T76 1030 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 CACYBPQ9HB71 228 aaKnown RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 TRPC6Q9Y210 931 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 SLC12A2P55011 1212 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 FANCCQ00597 558 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 CABP7Q86V35 215 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 AFAP1L2Q8N4X5 818 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 VPS54Q9P1Q0 977 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 PCDHB13Q9Y5F0 798 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 A0A1B0GUA9 196 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 BUB1BO60566 1050 aaPredicted RBP13.98□□□□□ -0.17
SDC3-201ENST00000336798 SEC24BO95487 1268 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 DCLK2Q8N568 766 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 FAM207AQ9NSI2 230 aaPredicted RBP13.98□□□□□ -0.17
SDC3-201ENST00000336798 FANCAO15360 1455 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 ABCB4P21439 1286 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 HOXC9P31274 260 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 RILPL1Q5EBL4 403 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 VSIG1Q86XK7 387 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 CTAGE3PQ8IX95 158 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 TCIRG1Q13488 830 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 CCDC62Q6P9F0 684 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 GBP7Q8N8V2 638 aaPredicted RBP13.98□□□□□ -0.17
SDC3-201ENST00000336798 SLF1Q9BQI6 1058 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 SOS1Q07889 1333 aaPredicted RBP13.98□□□□□ -0.17
SDC3-201ENST00000336798 NDUFAB1O14561 156 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 VAMP4O75379 141 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 IGBP1P78318 339 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 USP26Q9BXU7 913 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 KLHL30Q0D2K2 578 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 SLC9C1Q4G0N8 1177 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 GADL1Q6ZQY3 521 aa13.98□□□□□ -0.17
SDC3-201ENST00000336798 SKA2Q8WVK7 121 aaPredicted RBP13.98□□□□□ -0.17
SDC3-201ENST00000336798 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.98□□□□□ -0.17
SDC3-201ENST00000336798 I3L4J1 428 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 EYA2O00167 538 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 KRT81Q14533 505 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 NONOQ15233 471 aaKnown RBP eCLIP13.97□□□□□ -0.17
SDC3-201ENST00000336798 C8orf34Q49A92 452 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 ADAT2Q7Z6V5 191 aaKnown RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 DCTPP1Q9H773 170 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 ANKFY1Q9P2R3 1169 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 BZW2Q9Y6E2 419 aaKnown RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 TCP10L2B9ZVM9 353 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 PDE8AO60658 829 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 PPP2R5AQ15172 486 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 SWAP70Q9UH65 585 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 STK38LQ9Y2H1 464 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 GOLGA6CA6NDK9 693 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 WDR46O15213 610 aaKnown RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 ZBTB24O43167 697 aaPredicted RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 OATP04181 439 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 GOLGA6DP0CG33 693 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 CACNA2D3Q8IZS8 1091 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 VCX3BQ9H321 246 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 GOLGA6AQ9NYA3 693 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 VPS41P49754 854 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 MTX1Q13505 466 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 ARHGEF16Q5VV41 709 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 MLXIPQ9HAP2 919 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 BCS1LQ9Y276 419 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.97□□□□□ -0.17
SDC3-201ENST00000336798 MYCP01106 439 aaPredicted RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 DMTNQ08495 405 aa13.97□□□□□ -0.17
SDC3-201ENST00000336798 DACT3Q96B18 629 aaPredicted RBP13.97□□□□□ -0.17
SDC3-201ENST00000336798 AP1ARQ63HQ0 302 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 RRAGAQ7L523 313 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 IFT20Q8IY31 132 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 NIM1KQ8IY84 436 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 ANGEL1Q9UNK9 670 aaKnown RBP13.96□□□□□ -0.17
SDC3-201ENST00000336798 IQGAP2Q13576 1575 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 ZNF532Q9HCE3 1301 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 PPP1R12AO14974 1030 aaPredicted RBP13.96□□□□□ -0.17
SDC3-201ENST00000336798 PPIP5K2O43314 1243 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 SNX21Q969T3 373 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 APOL6Q9BWW8 343 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 LSM14BQ9BX40 385 aaKnown RBP13.96□□□□□ -0.17
SDC3-201ENST00000336798 RBSNQ9H1K0 784 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 GBP1P32455 592 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 ZAP70P43403 619 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 GUCY2FP51841 1108 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 PNOCQ13519 176 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 U2AF1L4Q8WU68 220 aaKnown RBP13.96□□□□□ -0.17
SDC3-201ENST00000336798 APBA3O96018 575 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 IFNB1P01574 187 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 RSAD2Q8WXG1 361 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 HINFPQ9BQA5 517 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 USP40Q9NVE5 1235 aa13.96□□□□□ -0.17
SDC3-201ENST00000336798 SH3TC1Q8TE82 1336 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 MAGEA1P43355 309 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 SCNN1DP51172 638 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 GTF2IP78347 998 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 TFAP4Q01664 338 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 GPR162Q16538 588 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 LONRF2Q1L5Z9 754 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 TBC1D10BQ4KMP7 808 aaPredicted RBP13.96□□□□□ -0.18
SDC3-201ENST00000336798 PEX26Q7Z412 305 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 PNMA8AQ86V59 439 aaPredicted RBP13.96□□□□□ -0.18
SDC3-201ENST00000336798 SPATA5Q8NB90 893 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms