RNA–Protein interactions for RNA: ENST00000310546.2

SPSB4-201, Transcript of splA/ryanodine receptor domain and SOCS box containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB4, Length 2,908 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB4-201ENST00000310546 SLF1Q9BQI6 1058 aa20.37■□□□□ 0.85
SPSB4-201ENST00000310546 DACH1Q9UI36 760 aa20.37■□□□□ 0.85
SPSB4-201ENST00000310546 LRP6O75581 1613 aa20.37■□□□□ 0.85
SPSB4-201ENST00000310546 SCP2P22307 547 aa20.37■□□□□ 0.85
SPSB4-201ENST00000310546 FXR1P51114 621 aaKnown RBP eCLIP20.37■□□□□ 0.85
SPSB4-201ENST00000310546 HPS5Q9UPZ3 1129 aa20.37■□□□□ 0.85
SPSB4-201ENST00000310546 POLR2DO15514 142 aaKnown RBP20.36■□□□□ 0.85
SPSB4-201ENST00000310546 MYBL2P10244 700 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 TTC39AQ5SRH9 613 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 CNPY4Q8N129 248 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 MMS19Q96T76 1030 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 ALG1Q9BT22 464 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 SELENOOQ9BVL4 669 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 TRIM10Q9UDY6 481 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 SH3TC1Q8TE82 1336 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 PRC1O43663 620 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 BRD2P25440 801 aaKnown RBP20.36■□□□□ 0.85
SPSB4-201ENST00000310546 MDM2Q00987 491 aaPredicted RBP20.36■□□□□ 0.85
SPSB4-201ENST00000310546 AMPD2Q01433 879 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 FAM98CQ17RN3 349 aaKnown RBP20.36■□□□□ 0.85
SPSB4-201ENST00000310546 SMIM5Q71RC9 77 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 LRP10Q7Z4F1 713 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 PRPF38AQ8NAV1 312 aaKnown RBP20.36■□□□□ 0.85
SPSB4-201ENST00000310546 NEUROD6Q96NK8 337 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 CD248Q9HCU0 757 aa20.36■□□□□ 0.85
SPSB4-201ENST00000310546 LAMA4Q16363 1823 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 RXRAP19793 462 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 NEXNQ0ZGT2 675 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 EIF3HO15372 352 aaKnown RBP eCLIP20.35■□□□□ 0.85
SPSB4-201ENST00000310546 MCM3P25205 808 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 PPFIA1Q13136 1202 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 SPATA31A6Q5VVP1 1343 aa20.35■□□□□ 0.85
SPSB4-201ENST00000310546 KIAA0754O94854 1291 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 OTUD6BQ8N6M0 293 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 SERTAD1Q9UHV2 236 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 KCNG1Q9UIX4 513 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 COL14A1Q05707 1796 aaKnown RBP20.34■□□□□ 0.85
SPSB4-201ENST00000310546 NDUFAB1O14561 156 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 GYPCP04921 128 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 RDXP35241 583 aaKnown RBP20.34■□□□□ 0.85
SPSB4-201ENST00000310546 ARHGAP25P42331 645 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 KRT40Q6A162 431 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 CNGA4Q8IV77 575 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 MAP3K14Q99558 947 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 NBPF3Q9H094 633 aa20.34■□□□□ 0.85
SPSB4-201ENST00000310546 A0A087WZG4 1122 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 ERVK-24P63145 666 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 HELLSQ9NRZ9 838 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 WWC3Q9ULE0 1092 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 NEURL1BA8MQ27 555 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 KCNQ2O43526 872 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 CDC25AP30304 524 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 GNL3LQ9NVN8 582 aaKnown RBP20.33■□□□□ 0.85
SPSB4-201ENST00000310546 PAG1Q9NWQ8 432 aa20.33■□□□□ 0.85
SPSB4-201ENST00000310546 SHANK3Q9BYB0 1731 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 ERVV-2B6SEH9 535 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 GPTP24298 496 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 CCT6AP40227 531 aaKnown RBP20.33■□□□□ 0.84
SPSB4-201ENST00000310546 GRIN1Q05586 938 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 RPAINQ86UA6 219 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 SYNE4Q8N205 404 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 PHKBQ93100 1093 aa20.33■□□□□ 0.84
SPSB4-201ENST00000310546 PLCH1Q4KWH8 1693 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 GRIN2DO15399 1336 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 GLI3P10071 1580 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 MORC3Q14149 939 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 KRI1Q8N9T8 703 aaKnown RBP20.32■□□□□ 0.84
SPSB4-201ENST00000310546 FAM237AA0A1B0GTK4 181 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 ATP2B2Q01814 1243 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 PTF1AQ7RTS3 328 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 SLC4A9Q96Q91 983 aa20.32■□□□□ 0.84
SPSB4-201ENST00000310546 NUP88Q99567 741 aaPredicted RBP20.32■□□□□ 0.84
SPSB4-201ENST00000310546 MAST3O60307 1309 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 COBLO75128 1261 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 TRDNQ13061 729 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 GCKRQ14397 625 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 DDB1Q16531 1140 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 APTXQ7Z2E3 356 aaKnown RBP20.31■□□□□ 0.84
SPSB4-201ENST00000310546 TMTC1Q8IUR5 882 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 SEC31BQ9NQW1 1179 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 MYO1AQ9UBC5 1043 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 ADD3Q9UEY8 706 aaKnown RBP20.31■□□□□ 0.84
SPSB4-201ENST00000310546 TFR2Q9UP52 801 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 PLCD1P51178 756 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 PTPN12Q05209 780 aaKnown RBP20.31■□□□□ 0.84
SPSB4-201ENST00000310546 FILIP1LQ4L180 1135 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 ANKRD18AQ8IVF6 992 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 CAGE1Q8TC20 777 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 METTL22Q9BUU2 404 aaPredicted RBP20.31■□□□□ 0.84
SPSB4-201ENST00000310546 CENPHQ9H3R5 247 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 POLD4Q9HCU8 107 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 SAR1BQ9Y6B6 198 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 UTYO14607 1347 aa20.31■□□□□ 0.84
SPSB4-201ENST00000310546 ATP1A1P05023 1023 aaKnown RBP20.3■□□□□ 0.84
SPSB4-201ENST00000310546 PPP2R5AQ15172 486 aa20.3■□□□□ 0.84
SPSB4-201ENST00000310546 TRAPPC11Q7Z392 1133 aa20.3■□□□□ 0.84
SPSB4-201ENST00000310546 ZMYM1Q5SVZ6 1142 aa20.3■□□□□ 0.84
SPSB4-201ENST00000310546 RFX7Q2KHR2 1363 aa20.3■□□□□ 0.84
SPSB4-201ENST00000310546 ZEB2O60315 1214 aa20.3■□□□□ 0.84
SPSB4-201ENST00000310546 SATB1Q01826 763 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms