RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 PNMA2Q9UL42 364 aa17.06■□□□□ 0.32
HCFC1-201ENST00000310441 CTNNA1P35221 906 aaKnown RBP17.05■□□□□ 0.32
HCFC1-201ENST00000310441 ANO1Q5XXA6 986 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 ARMC9Q7Z3E5 817 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 STAG1Q8WVM7 1258 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 GCKP35557 465 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 AKNAD1Q5T1N1 836 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 MICAL1Q8TDZ2 1067 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 KRT81Q14533 505 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 AMOTL2Q9Y2J4 779 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 POLR2DO15514 142 aaKnown RBP17.05■□□□□ 0.32
HCFC1-201ENST00000310441 MYCBPQ99417 103 aaPredicted RBP17.05■□□□□ 0.32
HCFC1-201ENST00000310441 USHBP1Q8N6Y0 703 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 HELBQ8NG08 1087 aaPredicted RBP17.05■□□□□ 0.32
HCFC1-201ENST00000310441 AZI2Q9H6S1 392 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 PPIP5K1Q6PFW1 1433 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 AP1ARQ63HQ0 302 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 IRX5P78411 483 aaPredicted RBP17.05■□□□□ 0.32
HCFC1-201ENST00000310441 DIXDC1Q155Q3 683 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 OTUD6AQ7L8S5 288 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 TRIM50Q86XT4 487 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 NME9Q86XW9 330 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 KDM2BQ8NHM5 1336 aa17.05■□□□□ 0.32
HCFC1-201ENST00000310441 PPP2R5DQ14738 602 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 POSTNQ15063 836 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 KRT25Q7Z3Z0 450 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 NONOQ15233 471 aaKnown RBP eCLIP17.04■□□□□ 0.32
HCFC1-201ENST00000310441 RINT1Q6NUQ1 792 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 PPP1R2P3Q6NXS1 205 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 CDKL2Q92772 493 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 VEZTQ9HBM0 779 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 CCPG1Q9ULG6 757 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 LRRD1A4D1F6 860 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 RLBP1P12271 317 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 XRCC5P13010 732 aaKnown RBP17.04■□□□□ 0.32
HCFC1-201ENST00000310441 WWC3Q9ULE0 1092 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 SPECC1L-ADORA2AF8WAN1 911 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 NR1I2O75469 434 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 LETM2Q2VYF4 491 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 ATF7P17544 494 aaPredicted RBP17.04■□□□□ 0.32
HCFC1-201ENST00000310441 POLR2BP30876 1174 aaKnown RBP17.04■□□□□ 0.32
HCFC1-201ENST00000310441 JADE1Q6IE81 842 aa17.04■□□□□ 0.32
HCFC1-201ENST00000310441 PRPF6O94906 941 aaKnown RBP17.03■□□□□ 0.32
HCFC1-201ENST00000310441 ABCD1P33897 745 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 CDR2Q01850 454 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 KLHL30Q0D2K2 578 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 ASPHQ12797 758 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 MMEL1Q495T6 779 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 STAM2O75886 525 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 GCNT3O95395 438 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 TSHZ3Q63HK5 1081 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.03■□□□□ 0.32
HCFC1-201ENST00000310441 CD109Q6YHK3 1445 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 LINS1Q8NG48 757 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 ZC4H2Q9NQZ6 224 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 S100BP04271 92 aaPredicted RBP17.03■□□□□ 0.32
HCFC1-201ENST00000310441 SRGAP2BP0DMP2 458 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 CCDC13Q8IYE1 715 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 TRPM2O94759 1503 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 RFX1P22670 979 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 NLRP12P59046 1061 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 AKAP4Q5JQC9 854 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 SNCBQ16143 134 aa17.03■□□□□ 0.32
HCFC1-201ENST00000310441 PRXQ9BXM0 1461 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 CEP104O60308 925 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 VPS37BQ9H9H4 285 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 FANCCQ00597 558 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 APOBRQ0VD83 1088 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 TSC1Q92574 1164 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 MAP3K5Q99683 1374 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 F8W8V4 182 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 CXorf38Q8TB03 319 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 SLC5A4Q9NY91 659 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 LRCH2Q5VUJ6 765 aa17.02■□□□□ 0.32
HCFC1-201ENST00000310441 BZW2Q9Y6E2 419 aaKnown RBP17.02■□□□□ 0.32
HCFC1-201ENST00000310441 TUBB6Q9BUF5 446 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 CLSTN2Q9H4D0 955 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 ZNF75DP51815 510 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 KDM5BQ9UGL1 1544 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 ZNF202O95125 648 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 HADHQ16836 314 aaKnown RBP17.02■□□□□ 0.31
HCFC1-201ENST00000310441 XAGE3Q8WTP9 111 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 SPDL1Q96EA4 605 aa17.02■□□□□ 0.31
HCFC1-201ENST00000310441 GCC2Q8IWJ2 1684 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 SUN1O94901 812 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 SERPINB6P35237 376 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 ZCRB1Q8TBF4 217 aaKnown RBP17.01■□□□□ 0.31
HCFC1-201ENST00000310441 EFCC1Q9HA90 598 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 RAB20Q9NX57 234 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 NIP7Q9Y221 180 aaKnown RBP eCLIP17.01■□□□□ 0.31
HCFC1-201ENST00000310441 EIF3DO15371 548 aaKnown RBP eCLIP17.01■□□□□ 0.313e-6■■■■□ 21.9
HCFC1-201ENST00000310441 RNF8O76064 485 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 OAS2P29728 719 aaKnown RBP17.01■□□□□ 0.31
HCFC1-201ENST00000310441 RBM17Q96I25 401 aaKnown RBP17.01■□□□□ 0.31
HCFC1-201ENST00000310441 FAM81BQ96LP2 452 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 BAIAP2L1Q9UHR4 511 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 STAT1P42224 750 aa17.01■□□□□ 0.31
HCFC1-201ENST00000310441 PRPSAP1Q14558 356 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms