RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 BLZF1Q9H2G9 400 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 NIP7Q9Y221 180 aaKnown RBP eCLIP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 IBTKQ9P2D0 1353 aaPredicted RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 PTPRTO14522 1441 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 GMNNO75496 209 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 KCNA6P17658 529 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 TXKP42681 527 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ATP7AQ04656 1500 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ARMT1Q9H993 441 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ZNF219Q9P2Y4 722 aaPredicted RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ARID4AP29374 1257 aaPredicted RBP19.23■□□□□ 0.67
SYNPO-201ENST00000307662 C2CD5Q86YS7 1000 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 GBP5Q96PP8 586 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 DSCC1Q9BVC3 393 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 HAUS4Q9H6D7 363 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 KCNJ18B7U540 433 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 E7EWF7 191 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 KRT15P19012 456 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 KCNJ12Q14500 433 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 SETDB2Q96T68 719 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 HIP1RO75146 1068 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 MUM1Q2TAK8 710 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 METTL22Q9BUU2 404 aaPredicted RBP19.23■□□□□ 0.67
SYNPO-201ENST00000307662 PALD1Q9ULE6 856 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 KCNJ14Q9UNX9 436 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 F8W031 263 aaPredicted RBP19.23■□□□□ 0.67
SYNPO-201ENST00000307662 I3L4J1 428 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 STX2P32856 288 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 ST5P78524 1137 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 DZIP3Q86Y13 1208 aaKnown RBP19.23■□□□□ 0.67
SYNPO-201ENST00000307662 KLHDC4Q8TBB5 520 aa19.23■□□□□ 0.67
SYNPO-201ENST00000307662 FAM207AQ9NSI2 230 aaPredicted RBP19.23■□□□□ 0.67
SYNPO-201ENST00000307662 ANKRD20A3Q5VUR7 823 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 XAGE2Q96GT9 111 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 MYL10Q9BUA6 226 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 APBA1Q02410 837 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 KLHL14Q9P2G3 628 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 ABCC4O15439 1325 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 SETSIPP0DME0 302 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 SNCBQ16143 134 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 PPP1R21Q6ZMI0 780 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 TTC6Q86TZ1 520 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 GPIHBP1Q8IV16 184 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 ZNF274Q96GC6 653 aaPredicted RBP19.22■□□□□ 0.67
SYNPO-201ENST00000307662 PLEKHA4Q9H4M7 779 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 ZSWIM6Q9HCJ5 1215 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 USP19O94966 1318 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 STX10O60499 249 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 CMA1P23946 247 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 TRIML1Q8N9V2 468 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 MGARPQ8TDB4 240 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 CABLES1Q8TDN4 633 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 LRWD1Q9UFC0 647 aa19.22■□□□□ 0.67
SYNPO-201ENST00000307662 LONRF2Q1L5Z9 754 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 SRGAP1Q7Z6B7 1085 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 SIRT1Q96EB6 747 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 HOMER3Q9NSC5 361 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.21■□□□□ 0.67
SYNPO-201ENST00000307662 TXNDC9O14530 226 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 CCT5P48643 541 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 CCDC170Q8IYT3 715 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 ANKRD42Q8N9B4 389 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 STAMQ92783 540 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 TPCN1Q9ULQ1 816 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 SAMD9Q5K651 1589 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 LDHBP07195 334 aaKnown RBP19.21■□□□□ 0.67
SYNPO-201ENST00000307662 TCP1P17987 556 aaKnown RBP19.21■□□□□ 0.67
SYNPO-201ENST00000307662 ITIH3Q06033 890 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 BIRC3Q13489 604 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 MORC3Q14149 939 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 EFCAB13Q8IY85 973 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 NRBP1Q9UHY1 535 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 ZBTB21Q9ULJ3 1066 aa19.21■□□□□ 0.67
SYNPO-201ENST00000307662 SEC31AO94979 1220 aaKnown RBP19.2■□□□□ 0.66
SYNPO-201ENST00000307662 FNBP1Q96RU3 617 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 FANCLQ9NW38 375 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 DENND2AQ9ULE3 1009 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 NONOQ15233 471 aaKnown RBP eCLIP19.2■□□□□ 0.66
SYNPO-201ENST00000307662 KRT25Q7Z3Z0 450 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 BANK1Q8NDB2 785 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 SNX29Q8TEQ0 813 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 CDC23Q9UJX2 597 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 AMFRQ9UKV5 643 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 ODF2LQ9ULJ1 636 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 CABP7Q86V35 215 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 ZNF526Q8TF50 670 aaPredicted RBP19.2■□□□□ 0.66
SYNPO-201ENST00000307662 MAIP1Q8WWC4 291 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 NUF2Q9BZD4 464 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 SH3BGRP55822 239 aaPredicted RBP19.2■□□□□ 0.66
SYNPO-201ENST00000307662 PFKFB2O60825 505 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 HERC4Q5GLZ8 1057 aaPredicted RBP19.2■□□□□ 0.66
SYNPO-201ENST00000307662 PHLDB3Q6NSJ2 640 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 DYMQ7RTS9 669 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 SUCLG2Q96I99 432 aa19.2■□□□□ 0.66
SYNPO-201ENST00000307662 LGSNQ5TDP6 509 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 PLBD2Q8NHP8 589 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 TROVE2P10155 538 aaKnown RBP eCLIP19.19■□□□□ 0.66
SYNPO-201ENST00000307662 MRPS9P82933 396 aaKnown RBP19.19■□□□□ 0.66
SYNPO-201ENST00000307662 PCDH11XQ9BZA7 1347 aa19.19■□□□□ 0.66
SYNPO-201ENST00000307662 PCDH11YQ9BZA8 1340 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms