RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 Q3C1V9 767 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 MFSD14CQ5VZR4 134 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 TATDN1Q6P1N9 297 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 TTC6Q86TZ1 520 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 TMEM57Q8N5G2 664 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 UBE2OQ9C0C9 1292 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 SERPINB13Q9UIV8 391 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 NOP58Q9Y2X3 529 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 SLC15A5A6NIM6 579 aa18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 MSCO60682 206 aa18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 IDH1O75874 414 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 LHX8Q68G74 356 aa18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 EDC3Q96F86 508 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 KIAA1683Q9H0B3 1180 aa18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 PIH1D3Q9NQM4 214 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 IVNS1ABPQ9Y6Y0 642 aa18.01■□□□□ 0.47
CCDC88B-201ENST00000301897 DNAH12Q6ZR08 3092 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 PEX10O60683 326 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 DYNLL1P63167 89 aaKnown RBP18■□□□□ 0.47
CCDC88B-201ENST00000301897 MAP3K12Q12852 859 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 SHROOM1Q2M3G4 852 aaPredicted RBP18■□□□□ 0.47
CCDC88B-201ENST00000301897 CERKLQ49MI3 558 aaPredicted RBP18■□□□□ 0.47
CCDC88B-201ENST00000301897 LBX2Q6XYB7 198 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 CABP5Q9NP86 173 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 DBNLQ9UJU6 430 aaKnown RBP18■□□□□ 0.47
CCDC88B-201ENST00000301897 TNNQ9UQP3 1299 aa18■□□□□ 0.47
CCDC88B-201ENST00000301897 CCND3P30281 292 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 RAB3GAP1Q15042 981 aa17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 CCL14Q16627 93 aa17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 ABCB5Q2M3G0 1257 aa17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 CATSPERGQ6ZRH7 1159 aa17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 FTSJ3Q8IY81 847 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 STXBP5LQ9Y2K9 1186 aa17.99■□□□□ 0.47
CCDC88B-201ENST00000301897 HOXC6P09630 235 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 VCAM1P19320 739 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 ZYXQ15942 572 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 WDR78Q5VTH9 848 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 MAGEB6Q8N7X4 407 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 MIGA1Q8NAN2 632 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 FRMPD3Q5JV73 1810 aa17.98■□□□□ 0.47
CCDC88B-201ENST00000301897 CNMDO75829 334 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 PTPREP23469 700 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 ATP2B2Q01814 1243 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 LRRC26Q2I0M4 334 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 POTEEQ6S8J3 1075 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 ERC1Q8IUD2 1116 aa17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 CCDC8Q9H0W5 538 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-201ENST00000301897 GRB14Q14449 540 aa17.96■□□□□ 0.47
CCDC88B-201ENST00000301897 EAF2Q96CJ1 260 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-201ENST00000301897 LBHD1Q9BQE6 289 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-201ENST00000301897 MTMR10Q9NXD2 777 aa17.96■□□□□ 0.47
CCDC88B-201ENST00000301897 DDX20Q9UHI6 824 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-201ENST00000301897 TTF1Q15361 905 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-201ENST00000301897 ITPRIPQ8IWB1 547 aa17.95■□□□□ 0.46
CCDC88B-201ENST00000301897 LPAR1Q92633 364 aa17.95■□□□□ 0.46
CCDC88B-201ENST00000301897 HOXC10Q9NYD6 342 aa17.95■□□□□ 0.46
CCDC88B-201ENST00000301897 TLR7Q9NYK1 1049 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-201ENST00000301897 LAMA2P24043 3122 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 SPDYE16A6NNV3 312 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 STRNO43815 780 aa17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 POLR3DP05423 398 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 HSP90AB4PQ58FF6 505 aa17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 FAM109BQ6ICB4 259 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 Q7L0L9 218 aa17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 CRNKL1Q9BZJ0 848 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 SENP6Q9GZR1 1112 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 RPAP3Q9H6T3 665 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 C1orf115Q9H7X2 142 aa17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 PRKAG2Q9UGJ0 569 aa17.94■□□□□ 0.46
CCDC88B-201ENST00000301897 DNM1LO00429 736 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 CNGA1P29973 690 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 SHMT1P34896 483 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 MDM2Q00987 491 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 MB21D1Q8N884 522 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 ARRDC4Q8NCT1 418 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 ACER1Q8TDN7 264 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 SLC5A4Q9NY91 659 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 FLRT1Q9NZU1 646 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 BTBD7Q9P203 1132 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 ZNF236Q9UL36 1845 aa17.93■□□□□ 0.46
CCDC88B-201ENST00000301897 MAGEB6P1A0A0J9YX57 407 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 PLCD1P51178 756 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 COG2Q14746 738 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 OLFML2BQ68BL8 750 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 DPP9Q86TI2 863 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 SHCBP1Q8NEM2 672 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 RIOK1Q9BRS2 568 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 NDUFB9Q9Y6M9 179 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 NAV1Q8NEY1 1877 aa17.92■□□□□ 0.46
CCDC88B-201ENST00000301897 GABPAQ06546 454 aa17.91■□□□□ 0.46
CCDC88B-201ENST00000301897 AACSQ86V21 672 aa17.91■□□□□ 0.46
CCDC88B-201ENST00000301897 ANTXR1Q9H6X2 564 aa17.91■□□□□ 0.46
CCDC88B-201ENST00000301897 UNC80Q8N2C7 3258 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 KBTBD13C9JR72 458 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 IGHA2P01877 340 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 CYBAP13498 195 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 CYP2C19P33261 490 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 SEPT2Q15019 361 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 CEP85Q6P2H3 762 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 NPLOC4Q8TAT6 608 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms