RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CYP27A1Q02318 531 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 CCDC96Q2M329 555 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 IQCEQ6IPM2 695 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 TMED8Q6PL24 325 aaPredicted RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 FAM184BQ9ULE4 1060 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 RRP12Q5JTH9 1297 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 RRAGBQ5VZM2 374 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 RESP18Q5W5W9 173 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 CCNI2Q6ZMN8 369 aaPredicted RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 PNMA8AQ86V59 439 aaPredicted RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 SPDL1Q96EA4 605 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 THOC1Q96FV9 657 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 CCDC43Q96MW1 224 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 BLZF1Q9H2G9 400 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 ABHD10Q9NUJ1 306 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 BTBD18B2RXH4 712 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 BUB1BO60566 1050 aaPredicted RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 IFIT1P09914 478 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 ATP5JP18859 108 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 PLCD1P51178 756 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 EXOSC10Q01780 885 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 EPHA10Q5JZY3 1008 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 NAA35Q5VZE5 725 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 CMTR1Q8N1G2 835 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 KBTBD3Q8NAB2 608 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 CCDC85AQ96PX6 553 aaPredicted RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 LRRC1Q9BTT6 524 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 EHD2Q9NZN4 543 aa11.43□□□□□ -0.58
CLDN1-201ENST00000295522 DMGDHQ9UI17 866 aaKnown RBP11.43□□□□□ -0.58
CLDN1-201ENST00000295522 A0A1B0GTH6 734 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 GOLGA6L10A6NI86 522 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 KIF4AO95239 1232 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 NDUFA10O95299 355 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 KCTD19Q17RG1 926 aaPredicted RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 NBPF14Q5TI25 921 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 ZNF530Q6P9A1 599 aaPredicted RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 ANKRD24Q8TF21 1146 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 RNPC3Q96LT9 517 aaKnown RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 KRT86O43790 486 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 AP1ARQ63HQ0 302 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 MSL1Q68DK7 614 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 SMCR8Q8TEV9 937 aaPredicted RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 RSRC1Q96IZ7 334 aaKnown RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 CTAGE1Q96RT6 745 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 TACO1Q9BSH4 297 aaKnown RBP11.42□□□□□ -0.58
CLDN1-201ENST00000295522 MCM8Q9UJA3 840 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 IFT172Q9UG01 1749 aa11.42□□□□□ -0.58
CLDN1-201ENST00000295522 RNF225M0QZC1 329 aaPredicted RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ZNF213O14771 459 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ZNF18P17022 549 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 LSP1P33241 339 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 MAP2K1Q02750 393 aaPredicted RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 HLTFQ14527 1009 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 LINS1Q8NG48 757 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 KIF20BQ96Q89 1820 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 KIF9Q9HAQ2 790 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ZNHIT6Q9NWK9 470 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 GRIN2DO15399 1336 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 SPATA1Q5VX52 437 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 PARP9Q8IXQ6 854 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ANKRD13CQ8N6S4 541 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ZNF473Q8WTR7 871 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 CPSF2Q9P2I0 782 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 LUC7L2Q9Y383 392 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 DUSP10Q9Y6W6 482 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 SALL1Q9NSC2 1324 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 GOLGA8AA7E2F4 631 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 MYBL1P10243 752 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 TRIM21P19474 475 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 CCNHP51946 323 aaPredicted RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 NCOA7Q8NI08 942 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 SEC31BQ9NQW1 1179 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 DDX20Q9UHI6 824 aaKnown RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 AMOTL2Q9Y2J4 779 aa11.41□□□□□ -0.58
CLDN1-201ENST00000295522 ZBTB12Q9Y330 459 aaPredicted RBP11.41□□□□□ -0.58
CLDN1-201ENST00000295522 PDE2AO00408 941 aaPredicted RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 OPLAHO14841 1288 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 CLTAP09496 248 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 MYO1EQ12965 1108 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 PPP1R7Q15435 360 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 C8orf74Q6P047 294 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 TSEN2Q8NCE0 465 aaKnown RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 NUP133Q8WUM0 1156 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 TCP11Q8WWU5 503 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 CCT8L2Q96SF2 557 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 DENND2AQ9ULE3 1009 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 HPSEQ9Y251 543 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 LMTK2Q8IWU2 1503 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 ANKRD18BA2A2Z9 1011 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 MPHOSPH10O00566 681 aaKnown RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 SHOX2O60902 331 aaPredicted RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 PPP6R2O75170 966 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 NR1D1P20393 614 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 PREPLQ4J6C6 727 aaPredicted RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 TTMPQ5BVD1 217 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 ZBTB10Q96DT7 871 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 KAZALD1Q96I82 304 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 UBAC1Q9BSL1 405 aa11.4□□□□□ -0.58
CLDN1-201ENST00000295522 SPATS2LQ9NUQ6 558 aaKnown RBP11.4□□□□□ -0.58
CLDN1-201ENST00000295522 ADD3Q9UEY8 706 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms