RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 NKIRAS1Q9NYS0 192 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 PCDHB13Q9Y5F0 798 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 GADD45BO75293 160 aaPredicted RBP13.2□□□□□ -0.3
SHPRH-201ENST00000275233 NAPGQ99747 312 aaPredicted RBP13.2□□□□□ -0.3
SHPRH-201ENST00000275233 CSRNP2Q9H175 543 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 ST7Q9NRC1 585 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 GMNNO75496 209 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 STK10O94804 968 aaKnown RBP13.2□□□□□ -0.3
SHPRH-201ENST00000275233 POSTNQ15063 836 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 C8orf74Q6P047 294 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 VPS52Q8N1B4 723 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 ASIC3Q9UHC3 531 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 CTTNBP2Q8WZ74 1663 aa13.2□□□□□ -0.3
SHPRH-201ENST00000275233 TECP42680 631 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 CLUL1Q15846 466 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 C17orf53Q8N3J3 647 aaPredicted RBP13.19□□□□□ -0.3
SHPRH-201ENST00000275233 DKC1O60832 514 aaKnown RBP eCLIP13.19□□□□□ -0.3
SHPRH-201ENST00000275233 ALDH3A1P30838 453 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 SETDB1Q15047 1291 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 DAAM2Q86T65 1068 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NLRX1Q86UT6 975 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 C2CD5Q86YS7 1000 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 FAM76AQ8TAV0 307 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 TEKT1Q969V4 418 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 TBC1D31Q96DN5 1066 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 RBSNQ9H1K0 784 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 TRIM35Q9UPQ4 493 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 USP17L12C9JPN9 530 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 USP17L21D6R901 530 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 CEP104O60308 925 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 GAS7O60861 476 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 IGBP1P78318 339 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NBPF11Q86T75 865 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NOX5Q96PH1 765 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NAP1L3Q99457 506 aaPredicted RBP13.19□□□□□ -0.3
SHPRH-201ENST00000275233 SLAIN2Q9P270 581 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 LPXNO60711 386 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 INTS8Q75QN2 995 aaKnown RBP13.19□□□□□ -0.3
SHPRH-201ENST00000275233 MIER3Q7Z3K6 550 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NCAPG2Q86XI2 1143 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 PRR16Q569H4 304 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 TTLL7Q6ZT98 887 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 CCDC110Q8TBZ0 833 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NLRC4Q9NPP4 1024 aa13.19□□□□□ -0.3
SHPRH-201ENST00000275233 THRAP3Q9Y2W1 955 aaKnown RBP13.19□□□□□ -0.3
SHPRH-201ENST00000275233 NEURL1BA8MQ27 555 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 MAN1A1P33908 653 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 ZNF526Q8TF50 670 aaPredicted RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 IVLP07476 585 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 PSMD6Q15008 389 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 TYW1BQ6NUM6 668 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 CBX8Q9HC52 389 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 FAM207AQ9NSI2 230 aaPredicted RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 U2AF2P26368 475 aaKnown RBP eCLIP13.18□□□□□ -0.36e-7■■■■□ 20
SHPRH-201ENST00000275233 PDE6BP35913 854 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 FAM182BQ5T319 152 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 RIOK1Q9BRS2 568 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 CARD10Q9BWT7 1032 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 AFG3L2Q9Y4W6 797 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 RPS8P62241 208 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 HOOK2Q96ED9 719 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 EPSTI1Q96J88 318 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 IBTKQ9P2D0 1353 aaPredicted RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 BAG6P46379 1132 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 NLRP12P59046 1061 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 MTX1Q13505 466 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 REXO1Q8N1G1 1221 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 TBX22Q9Y458 520 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 COL17A1Q9UMD9 1497 aaPredicted RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 MAPKBP1O60336 1514 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 YARSP54577 528 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 SLC9C1Q4G0N8 1177 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 ATL3Q6DD88 541 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 FMNL3Q8IVF7 1028 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 DEPTORQ8TB45 409 aa13.18□□□□□ -0.3
SHPRH-201ENST00000275233 GPKOWQ92917 476 aaPredicted RBP eCLIP13.18□□□□□ -0.32e-8■■■■■ 52.2
SHPRH-201ENST00000275233 SECISBP2LQ93073 1101 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 LLPHQ9BRT6 129 aaKnown RBP13.18□□□□□ -0.3
SHPRH-201ENST00000275233 SGSM2O43147 1006 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 HDXQ7Z353 690 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 MMS19Q96T76 1030 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 EDC4Q6P2E9 1401 aaKnown RBP13.17□□□□□ -0.3
SHPRH-201ENST00000275233 ATXN8OSP0DMR3 200 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 TBC1D10BQ4KMP7 808 aaPredicted RBP13.17□□□□□ -0.3
SHPRH-201ENST00000275233 SCYL2Q6P3W7 929 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 KSR1Q8IVT5 923 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 LSM14BQ9BX40 385 aaKnown RBP13.17□□□□□ -0.3
SHPRH-201ENST00000275233 SERTAD1Q9UHV2 236 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 PPP1R2P41236 205 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 EIF4A1P60842 406 aaKnown RBP13.17□□□□□ -0.3
SHPRH-201ENST00000275233 KLHL30Q0D2K2 578 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 CCDC125Q86Z20 511 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 CFAP57Q96MR6 1250 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 SLF1Q9BQI6 1058 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 BIVM-ERCC5R4GMW8 1640 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 EBAG9O00559 213 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 RRAGAQ7L523 313 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 NSMCE1Q8WV22 266 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 BICRAQ9NZM4 1560 aa13.17□□□□□ -0.3
SHPRH-201ENST00000275233 GPBP1Q86WP2 473 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms