RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 GCC1Q96CN9 775 aa17.37■□□□□ 0.37
HMGN3-201ENST00000275036 STRBPQ96SI9 672 aaKnown RBP17.37■□□□□ 0.37
HMGN3-201ENST00000275036 MORF4L1Q9UBU8 362 aa17.37■□□□□ 0.37
HMGN3-201ENST00000275036 SLC4A4Q9Y6R1 1079 aa17.37■□□□□ 0.37
HMGN3-201ENST00000275036 USP17L12C9JPN9 530 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 USP17L21D6R901 530 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 ERC2O15083 957 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 RNF113AO15541 343 aaKnown RBP17.36■□□□□ 0.37
HMGN3-201ENST00000275036 ADCY3O60266 1144 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 GLRX3O76003 335 aaKnown RBP17.36■□□□□ 0.37
HMGN3-201ENST00000275036 HERVK_113P62684 666 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 IRX3P78415 501 aaPredicted RBP17.36■□□□□ 0.37
HMGN3-201ENST00000275036 SEPT2Q15019 361 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 C12orf60Q5U649 245 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 PRPF38BQ5VTL8 546 aaKnown RBP17.36■□□□□ 0.37
HMGN3-201ENST00000275036 USP17L2Q6R6M4 530 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 APPBP2Q92624 585 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 C12orf42Q96LP6 360 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 RBPJLQ9UBG7 517 aa17.36■□□□□ 0.37
HMGN3-201ENST00000275036 SUPT16HQ9Y5B9 1047 aaKnown RBP17.36■□□□□ 0.37
HMGN3-201ENST00000275036 A0A1W2PRG0 241 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 M0R2C6 588 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 CCL5P13501 91 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 IRF5Q13568 498 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 AAMPQ13685 434 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 CTR9Q6PD62 1173 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 SLAIN1Q8ND83 568 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 UNC93B1Q9H1C4 597 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 GJD2Q9UKL4 321 aa17.35■□□□□ 0.37
HMGN3-201ENST00000275036 GSG1L2A8MUP6 293 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 CNMDO75829 334 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 IGHDP01880 384 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 VCAM1P19320 739 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 Q3C1V9 767 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 CLEC10AQ8IUN9 316 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 SMC5Q8IY18 1101 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 SEC62Q99442 399 aaKnown RBP17.34■□□□□ 0.37
HMGN3-201ENST00000275036 FEZ1Q99689 392 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 GREB1LQ9C091 1923 aaPredicted RBP17.34■□□□□ 0.37
HMGN3-201ENST00000275036 KIAA1683Q9H0B3 1180 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 CABP5Q9NP86 173 aa17.34■□□□□ 0.37
HMGN3-201ENST00000275036 RLFQ13129 1914 aa17.33■□□□□ 0.37
HMGN3-201ENST00000275036 GPAA1O43292 621 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 INHAP05111 366 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 ZFYP08048 801 aaPredicted RBP17.33■□□□□ 0.36
HMGN3-201ENST00000275036 AKR1B1P15121 316 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 KIAA1755Q5JYT7 1200 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 PXYLP1Q8TE99 480 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 COA7Q96BR5 231 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 EPB41L4AQ9HCS5 686 aaPredicted RBP17.33■□□□□ 0.36
HMGN3-201ENST00000275036 STAP2Q9UGK3 403 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 SWAP70Q9UH65 585 aa17.33■□□□□ 0.36
HMGN3-201ENST00000275036 MPHOSPH10O00566 681 aaKnown RBP17.32■□□□□ 0.36
HMGN3-201ENST00000275036 CDK8P49336 464 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 PDE1AP54750 535 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 C16orf86Q6ZW13 317 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 SIAH1Q8IUQ4 282 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 FSD1Q9BTV5 496 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 LNPKQ9C0E8 428 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 RNF208Q9H0X6 261 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 PORCNQ9H237 461 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 BIN2Q9UBW5 565 aaPredicted RBP17.32■□□□□ 0.36
HMGN3-201ENST00000275036 TAOK2Q9UL54 1235 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 PARP14Q460N5 1801 aa17.32■□□□□ 0.36
HMGN3-201ENST00000275036 A0A0G2JMZ2 1700 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 GJB1P08034 283 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 GJA8P48165 433 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 ERVK-9P63128 1117 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 ERVK-24P63145 666 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 UBXN2AP68543 259 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 TRIM32Q13049 653 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 B4GALNT3Q6L9W6 998 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 CATSPERGQ6ZRH7 1159 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 GPRC5AQ8NFJ5 357 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 PAGR1Q9BTK6 254 aa17.31■□□□□ 0.36
HMGN3-201ENST00000275036 RWDD1Q9H446 243 aaPredicted RBP17.31■□□□□ 0.36
HMGN3-201ENST00000275036 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L15C9J2P7 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L13C9JLJ4 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L11C9JVI0 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L18D6R9N7 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L22D6RA61 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L17D6RBQ6 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L19D6RCP7 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L20D6RJB6 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP14P54578 494 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 USP17L24Q0WX57 530 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 SBK1Q52WX2 424 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 ZMYM1Q5SVZ6 1142 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 TMEM179Q6ZVK1 233 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 UBE2Q1Q7Z7E8 422 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 DDRGK1Q96HY6 314 aa17.3■□□□□ 0.36
HMGN3-201ENST00000275036 RPAP3Q9H6T3 665 aaPredicted RBP17.3■□□□□ 0.36
HMGN3-201ENST00000275036 ARPP21Q9UBL0 812 aaPredicted RBP17.3■□□□□ 0.36
HMGN3-201ENST00000275036 SPDYE16A6NNV3 312 aaPredicted RBP17.29■□□□□ 0.36
HMGN3-201ENST00000275036 GIMAP6Q6P9H5 292 aa17.29■□□□□ 0.36
HMGN3-201ENST00000275036 AMOTL1Q8IY63 956 aa17.29■□□□□ 0.36
HMGN3-201ENST00000275036 U2AF1L4Q8WU68 220 aaKnown RBP17.29■□□□□ 0.36
HMGN3-201ENST00000275036 TRIB2Q92519 343 aa17.29■□□□□ 0.36
HMGN3-201ENST00000275036 BTBD7Q9P203 1132 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms