RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 SPATA31A6Q5VVP1 1343 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 COL5A2P05997 1499 aaPredicted RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 RHOXF2BP0C7M4 288 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 FGFR2P21802 821 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 CHRNDQ07001 517 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 MCM6Q14566 821 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 ZNF569Q5MCW4 686 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 PIK3AP1Q6ZUJ8 805 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 ENAHQ8N8S7 591 aaPredicted RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 WASF1Q92558 559 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 RHOXF2Q9BQY4 288 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 PARD6BQ9BYG5 372 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 CNNM2Q9H8M5 875 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 ARGLU1Q9NWB6 273 aaPredicted RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 PHLPP2Q6ZVD8 1323 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 RNF225M0QZC1 329 aaPredicted RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 IGHMBP2P38935 993 aaKnown RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 IFIT1BQ5T764 474 aaKnown RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 SLC51AQ86UW1 340 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 NUTM2AQ8IVF1 878 aaPredicted RBP10.39□□□□□ -0.75
MSH4-201ENST00000263187 PAGE5Q96GU1 130 aa10.39□□□□□ -0.75
MSH4-201ENST00000263187 WDR19Q8NEZ3 1342 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 MAGEB6P1A0A0J9YX57 407 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 AKR1B15C9JRZ8 316 aaPredicted RBP10.38□□□□□ -0.75
MSH4-201ENST00000263187 CYP2D6P10635 497 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 ZNF18P17022 549 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 KLRK1P26718 216 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 ATP6V1AP38606 617 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 SKIDA1Q1XH10 827 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 C3orf67Q6ZVT6 689 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 MLKLQ8NB16 471 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 RASSF8Q8NHQ8 419 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 KCND1Q9NSA2 647 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 TAB2Q9NYJ8 693 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 TFCP2L1Q9NZI6 479 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 SRPRBQ9Y5M8 271 aaKnown RBP10.38□□□□□ -0.75
MSH4-201ENST00000263187 CCP110O43303 1012 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 FXR1P51114 621 aaKnown RBP eCLIP10.38□□□□□ -0.75
MSH4-201ENST00000263187 PTGDRQ13258 359 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 RRAGBQ5VZM2 374 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 MROH5Q6ZUA9 1318 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 SYNRGQ9UMZ2 1314 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 USP17L12C9JPN9 530 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 USP17L21D6R901 530 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 ERCC3P19447 782 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 PLCD1P51178 756 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 TBX2Q13207 712 aaPredicted RBP10.38□□□□□ -0.75
MSH4-201ENST00000263187 NR1I3Q14994 352 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 KIF4BQ2VIQ3 1234 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 ENOX1Q8TC92 643 aaKnown RBP10.38□□□□□ -0.75
MSH4-201ENST00000263187 FOXP1Q9H334 677 aaPredicted RBP10.38□□□□□ -0.75
MSH4-201ENST00000263187 TRIM10Q9UDY6 481 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 ABCC12Q96J65 1359 aa10.38□□□□□ -0.75
MSH4-201ENST00000263187 CDHR2Q9BYE9 1310 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 N4BP3O15049 544 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 PHACTR2O75167 634 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 ADAMTS2O95450 1211 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 OAS2P29728 719 aaKnown RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 CUL4BQ13620 913 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 PKN1Q16512 942 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 STAG1Q8WVM7 1258 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 ESR2Q92731 530 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 GPKOWQ92917 476 aaPredicted RBP eCLIP10.37□□□□□ -0.75
MSH4-201ENST00000263187 AATFQ9NY61 560 aaKnown RBP eCLIP10.37□□□□□ -0.75
MSH4-201ENST00000263187 SLIT2O94813 1529 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 AKAP11Q9UKA4 1901 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 PP2D1A8MPX8 630 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 EFCAB8A8MWE9 144 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 STX10O60499 249 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 GTF2E1P29083 439 aaPredicted RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 KRT2P35908 639 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 SARSP49591 514 aaKnown RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 DHX8Q14562 1220 aaKnown RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 ZSCAN10Q96SZ4 725 aaPredicted RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 NUP88Q99567 741 aaPredicted RBP10.37□□□□□ -0.75
MSH4-201ENST00000263187 SLF1Q9BQI6 1058 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 GDAQ9Y2T3 454 aa10.37□□□□□ -0.75
MSH4-201ENST00000263187 NUP188Q5SRE5 1749 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CCDC196A0A1B0GTZ2 297 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 TRIM49BA6NDI0 452 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 EXOC5O00471 708 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 TBC1D8O95759 1140 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CCDC175P0C221 793 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 NLRP5P59047 1200 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 MAP3K9P80192 1104 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CC2D1AQ6P1N0 951 aaPredicted RBP10.36□□□□□ -0.75
MSH4-201ENST00000263187 CATIPQ7Z7H3 387 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 KIFC2Q96AC6 838 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 GDAP1L1Q96MZ0 367 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 MRFAP1Q9Y605 127 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 FAM237AA0A1B0GTK4 181 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 ENC1O14682 589 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 ALX1Q15699 326 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CPVLQ9H3G5 476 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 DACH1Q9UI36 760 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 C4AP0C0L4 1744 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 C4BP0C0L5 1744 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 ZRANB2O95218 330 aaKnown RBP eCLIP10.36□□□□□ -0.75
MSH4-201ENST00000263187 CRKLP46109 303 aaKnown RBP10.36□□□□□ -0.75
MSH4-201ENST00000263187 SMC1AQ14683 1233 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms