RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TAF5LO75529 589 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 CRCPO75575 148 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 SLC9C1Q4G0N8 1177 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 ZNF365Q70YC5 407 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 MICALL1Q8N3F8 863 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 SPATA5Q8NB90 893 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 SH3BP5O60239 455 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 MIS12Q9H081 205 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 GOLGA5Q8TBA6 731 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 SMIM23A6NLE4 172 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 NEURL1BA8MQ27 555 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 ARHGEF6Q15052 776 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 FYB2Q5VWT5 728 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 CCDC84Q86UT8 332 aaPredicted RBP21.25■□□□□ 0.99
UPF1-201ENST00000262803 ZNF532Q9HCE3 1301 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 PLEKHG3A1L390 1219 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 VIMP08670 466 aaKnown RBP21.25■□□□□ 0.99
UPF1-201ENST00000262803 POSTNQ15063 836 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 GALNT17Q6IS24 598 aa21.25■□□□□ 0.99
UPF1-201ENST00000262803 RTEL1Q9NZ71 1219 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 PCP11498 1178 aaKnown RBP21.24■□□□□ 0.99
UPF1-201ENST00000262803 ATP2B4P23634 1241 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 SP4Q02446 784 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 PTH1RQ03431 593 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 ELF2Q15723 593 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 CPLX4Q7Z7G2 160 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 TBC1D31Q96DN5 1066 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 KCNJ14Q9UNX9 436 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 ZWINTO95229 277 aa21.24■□□□□ 0.99
UPF1-201ENST00000262803 TPD52P55327 224 aaPredicted RBP21.23■□□□□ 0.99
UPF1-201ENST00000262803 SNX29Q8TEQ0 813 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 CSADQ9Y600 493 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 GIPC1O14908 333 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 CIB2O75838 187 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 TXKP42681 527 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 KIF22Q14807 665 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 FLOT1O75955 427 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 KRT9P35527 623 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 NCAPH2Q6IBW4 605 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 CCDC25Q86WR0 208 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 EAF2Q96CJ1 260 aaPredicted RBP21.23■□□□□ 0.99
UPF1-201ENST00000262803 A0A0D9SFI3 127 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 TMTC1Q8IUR5 882 aa21.23■□□□□ 0.99
UPF1-201ENST00000262803 UTP11Q9Y3A2 253 aaKnown RBP21.23■□□□□ 0.99
UPF1-201ENST00000262803 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.23■□□□□ 0.99
UPF1-201ENST00000262803 CALCRLQ16602 461 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 MYSM1Q5VVJ2 828 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 TMC4Q7Z404 712 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 IL17REQ8NFR9 667 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 FEZ2Q9UHY8 353 aaPredicted RBP21.22■□□□□ 0.99
UPF1-201ENST00000262803 N4BP1O75113 896 aaKnown RBP21.22■□□□□ 0.99
UPF1-201ENST00000262803 AKNAD1Q5T1N1 836 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 DNAJC10Q8IXB1 793 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 GOLGA6CA6NDK9 693 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 GOLGA6BA6NDN3 693 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 GOLGA6DP0CG33 693 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 TERF1P54274 439 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 PKP1Q13835 747 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 GOLGA6AQ9NYA3 693 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 KIF21AQ7Z4S6 1674 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 NR1I2O75469 434 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 MCF2L2Q86YR7 1114 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 PRPF31Q8WWY3 499 aaKnown RBP21.22■□□□□ 0.99
UPF1-201ENST00000262803 CARD10Q9BWT7 1032 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 TAB2Q9NYJ8 693 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 CD2APQ9Y5K6 639 aa21.22■□□□□ 0.99
UPF1-201ENST00000262803 HAUS7Q99871 368 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 AATFQ9NY61 560 aaKnown RBP eCLIP21.21■□□□□ 0.995e-6■□□□□ 8.9
UPF1-201ENST00000262803 MYCLP12524 364 aaPredicted RBP21.21■□□□□ 0.99
UPF1-201ENST00000262803 ITIH3Q06033 890 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 MTMR6Q9Y217 621 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 CHMP2AO43633 222 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 MTX1Q13505 466 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 TRMT2AQ8IZ69 625 aaKnown RBP21.21■□□□□ 0.99
UPF1-201ENST00000262803 PPFIBP2Q8ND30 876 aa21.21■□□□□ 0.99
UPF1-201ENST00000262803 ADALQ6DHV7 355 aa21.2■□□□□ 0.99
UPF1-201ENST00000262803 KCNK9Q9NPC2 374 aa21.2■□□□□ 0.99
UPF1-201ENST00000262803 ATF7P17544 494 aaPredicted RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 C8orf74Q6P047 294 aa21.2■□□□□ 0.98
UPF1-201ENST00000262803 INTS8Q75QN2 995 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 XPO4Q9C0E2 1151 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 KCNQ3O43525 872 aa21.2■□□□□ 0.98
UPF1-201ENST00000262803 HARSP12081 509 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 SEC62Q99442 399 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.2■□□□□ 0.982e-6■■■■■ 39.6
UPF1-201ENST00000262803 IFT20Q8IY31 132 aa21.2■□□□□ 0.98
UPF1-201ENST00000262803 TRMT44Q8IYL2 757 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 VPS52Q8N1B4 723 aa21.2■□□□□ 0.98
UPF1-201ENST00000262803 UBLCP1Q8WVY7 318 aaPredicted RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 ZSWIM6Q9HCJ5 1215 aa21.2■□□□□ 0.98
UPF1-201ENST00000262803 MRPL11Q9Y3B7 192 aaKnown RBP21.2■□□□□ 0.98
UPF1-201ENST00000262803 SLC17A8Q8NDX2 589 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 ZNF274Q96GC6 653 aaPredicted RBP21.19■□□□□ 0.98
UPF1-201ENST00000262803 PARP2Q9UGN5 583 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 TPCN1Q9ULQ1 816 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 MAGI2Q86UL8 1455 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 PPP2R5EQ16537 467 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 KMT5BQ4FZB7 885 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 REXO1Q8N1G1 1221 aaKnown RBP21.19■□□□□ 0.98
UPF1-201ENST00000262803 CFAP74Q9C0B2 1584 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms