RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 ZNF654Q8IZM8 581 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 REXO1Q8N1G1 1221 aaKnown RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 ZNF365Q70YC5 407 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 SMCR8Q8TEV9 937 aaPredicted RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 CDCA7Q9BWT1 371 aaPredicted RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 SAMD15Q9P1V8 674 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 ADD1P35611 737 aaKnown RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 DAAM2Q86T65 1068 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 IBTKQ9P2D0 1353 aaPredicted RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 SECISBP2LQ93073 1101 aaKnown RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 IVLP07476 585 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 HSPA1LP34931 641 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 IRX3P78415 501 aaPredicted RBP20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 ZNF827Q17R98 1081 aa20.78■□□□□ 0.92
SMARCC1-201ENST00000254480 TNNI1P19237 187 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 HDXQ7Z353 690 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 GLG1Q92896 1179 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 EAF2Q96CJ1 260 aaPredicted RBP20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 NACA2Q9H009 215 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 ASIC3Q9UHC3 531 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 RIOK3O14730 519 aaKnown RBP20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 RRAGAQ7L523 313 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 PALD1Q9ULE6 856 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 EXOC7Q9UPT5 735 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 ALAS1P13196 640 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 GSPT1P15170 499 aaKnown RBP20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 CCDC14Q49A88 953 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 LIN9Q5TKA1 542 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 ELF2Q15723 593 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 PRR16Q569H4 304 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 BSPRYQ5W0U4 402 aa20.77■□□□□ 0.92
SMARCC1-201ENST00000254480 KLHL30Q0D2K2 578 aa20.77■□□□□ 0.91
SMARCC1-201ENST00000254480 FAM102BQ5T8I3 360 aa20.77■□□□□ 0.91
SMARCC1-201ENST00000254480 USP44Q9H0E7 712 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 CRCPO75575 148 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 MAGEA1P43355 309 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 GABPAQ06546 454 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 SLC9C1Q4G0N8 1177 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 GIGYF1O75420 1035 aaPredicted RBP20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 TPD52P55327 224 aaPredicted RBP20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 NOX5Q96PH1 765 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 THRAP3Q9Y2W1 955 aaKnown RBP20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 HOXB7P09629 217 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 TBC1D10BQ4KMP7 808 aaPredicted RBP20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 NKIRAS1Q9NYS0 192 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 UTP11Q9Y3A2 253 aaKnown RBP20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 VWA3BQ502W6 1294 aa20.76■□□□□ 0.91
SMARCC1-201ENST00000254480 GAS8O95995 478 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 ABCB4P21439 1286 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 FAM47CQ5HY64 1035 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 CASC4Q6P4E1 433 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 PFDN4Q9NQP4 134 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 ST7Q9NRC1 585 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 C10orf67Q8IYJ2 551 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 IFNL3Q8IZI9 196 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 MLKLQ8NB16 471 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 HINFPQ9BQA5 517 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 KIAA0556O60303 1618 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 GAS7O60861 476 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 BRDTQ58F21 947 aaPredicted RBP20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 ATP5JP18859 108 aa20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 PUS3Q9BZE2 481 aaKnown RBP20.75■□□□□ 0.91
SMARCC1-201ENST00000254480 CLIC6Q96NY7 704 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 PHKG2P15735 406 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 SPOUT1Q5T280 376 aaKnown RBP20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 TEKT1Q969V4 418 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 UBL4BQ8N7F7 174 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 KIAA1524Q8TCG1 905 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 ADORA1P30542 326 aa20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 GPR161Q8N6U8 529 aaKnown RBP20.74■□□□□ 0.91
SMARCC1-201ENST00000254480 NR1I2O75469 434 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 PRPF6O94906 941 aaKnown RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 SETDB1Q15047 1291 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 GPBP1Q86WP2 473 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 ZSCAN10Q96SZ4 725 aaPredicted RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 PKP1Q13835 747 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 GREM2Q9H772 168 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 IFRD2Q12894 506 aaPredicted RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 PROSER3Q2NL68 480 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 C2CD5Q86YS7 1000 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 TAB3Q8N5C8 712 aaPredicted RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 LSM14BQ9BX40 385 aaKnown RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 TPCN1Q9ULQ1 816 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 CTTNBP2Q8WZ74 1663 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 XPO4Q9C0E2 1151 aaKnown RBP20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 LTKP29376 864 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 TRIM14Q14142 442 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 ARHGEF16Q5VV41 709 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 ANAPC4Q9UJX5 808 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 AOX1Q06278 1338 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 KDM2BQ8NHM5 1336 aa20.73■□□□□ 0.91
SMARCC1-201ENST00000254480 USPL1Q5W0Q7 1092 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 DESI2Q9BSY9 194 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 LMBRD1Q9NUN5 540 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 TUBB4AP04350 444 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 UBXN2AP68543 259 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 INTS8Q75QN2 995 aaKnown RBP20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 MIER3Q7Z3K6 550 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 TMEM63CQ9P1W3 806 aa20.72■□□□□ 0.91
SMARCC1-201ENST00000254480 PRAMEF22A3QJZ6 481 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms