RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 RASSF8Q8NHQ8 419 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 CCDC34Q96HJ3 373 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 VPS16Q9H269 839 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 FOXP1Q9H334 677 aaPredicted RBP24.29■■□□□ 1.48
TRIM28-201ENST00000253024 RNF41Q9H4P4 317 aaPredicted RBP24.29■■□□□ 1.48
TRIM28-201ENST00000253024 MRPL44Q9H9J2 332 aaKnown RBP24.29■■□□□ 1.48
TRIM28-201ENST00000253024 SPEF2Q9C093 1822 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 CCDC196A0A1B0GTZ2 297 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 ABL1P00519 1130 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 KRT2P35908 639 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 TXNRD3Q86VQ6 643 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 TICAM2Q86XR7 235 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 TMEM139Q8IV31 216 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 SRPRBQ9Y5M8 271 aaKnown RBP24.29■■□□□ 1.48
TRIM28-201ENST00000253024 SHANK3Q9BYB0 1731 aa24.29■■□□□ 1.48
TRIM28-201ENST00000253024 ATRNO75882 1429 aa24.28■■□□□ 1.48
TRIM28-201ENST00000253024 NLRP5P59047 1200 aa24.28■■□□□ 1.48
TRIM28-201ENST00000253024 PUF60Q9UHX1 559 aaKnown RBP24.28■■□□□ 1.48
TRIM28-201ENST00000253024 SEC23AQ15436 765 aa24.28■■□□□ 1.48
TRIM28-201ENST00000253024 RBL2Q08999 1139 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 MORC3Q14149 939 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 SRBD1Q8N5C6 995 aaKnown RBP24.27■■□□□ 1.48
TRIM28-201ENST00000253024 CCDC12Q8WUD4 166 aaPredicted RBP24.27■■□□□ 1.48
TRIM28-201ENST00000253024 DYNLL2Q96FJ2 89 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 PP2D1A8MPX8 630 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 CAVIN4Q5BKX8 364 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 IQCA1Q86XH1 822 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 KRT222Q8N1A0 295 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 PAGE5Q96GU1 130 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 CTR9Q6PD62 1173 aa24.27■■□□□ 1.48
TRIM28-201ENST00000253024 FAM84BQ96KN1 310 aaPredicted RBP24.27■■□□□ 1.48
TRIM28-201ENST00000253024 RIOK1Q9BRS2 568 aaKnown RBP24.27■■□□□ 1.48
TRIM28-201ENST00000253024 USP17L8P0C7I0 530 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 GNAT2P19087 354 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 CASQ1P31415 396 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 DHX8Q14562 1220 aaKnown RBP24.26■■□□□ 1.47
TRIM28-201ENST00000253024 IGSF22Q8N9C0 903 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 TSPY2A6NKD2 308 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 MINPP1Q9UNW1 487 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 TFR2Q9UP52 801 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 PARP3Q9Y6F1 533 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 NUP98P52948 1817 aa24.26■■□□□ 1.47
TRIM28-201ENST00000253024 STK36Q9NRP7 1315 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 MYH2Q9UKX2 1941 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 ERCC3P19447 782 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 ZCCHC17Q9NP64 241 aaKnown RBP24.25■■□□□ 1.47
TRIM28-201ENST00000253024 EP400Q96L91 3159 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 MECOMQ03112 1051 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 SLC44A5Q8NCS7 719 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 CDC5LQ99459 802 aaKnown RBP24.25■■□□□ 1.47
TRIM28-201ENST00000253024 L2HGDHQ9H9P8 463 aa24.25■■□□□ 1.47
TRIM28-201ENST00000253024 RNF216Q9NWF9 866 aaPredicted RBP24.25■■□□□ 1.47
TRIM28-201ENST00000253024 SYNRGQ9UMZ2 1314 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 GOLGA8HP0CJ92 632 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 CUL4BQ13620 913 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 TTC38Q5R3I4 469 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 RRAGBQ5VZM2 374 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 BAZ2AQ9UIF9 1905 aaKnown RBP24.24■■□□□ 1.47
TRIM28-201ENST00000253024 KIF2AO00139 706 aaPredicted RBP24.24■■□□□ 1.47
TRIM28-201ENST00000253024 XBP1P17861 261 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 CASP14P31944 242 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 CCDC93Q567U6 631 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 MCM9Q9NXL9 1143 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 TAB2Q9NYJ8 693 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 COL1A1P02452 1464 aaPredicted RBP24.24■■□□□ 1.47
TRIM28-201ENST00000253024 ARHGAP6O43182 974 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 MLKLQ8NB16 471 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 ACRBPQ8NEB7 543 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 GNL3LQ9NVN8 582 aaKnown RBP24.24■■□□□ 1.47
TRIM28-201ENST00000253024 GDAQ9Y2T3 454 aa24.24■■□□□ 1.47
TRIM28-201ENST00000253024 PNPLA7Q6ZV29 1317 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 SYCP1Q15431 976 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 RAD9BQ6WBX8 426 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 STAG2Q8N3U4 1231 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 TRERF1Q96PN7 1200 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 UIMC1Q96RL1 719 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 ZNF18P17022 549 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 GYS2P54840 703 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 TROAPQ12815 778 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 TBC1D9BQ66K14 1250 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 CTCFLQ8NI51 663 aaPredicted RBP24.23■■□□□ 1.47
TRIM28-201ENST00000253024 ITGB4P16144 1822 aa24.23■■□□□ 1.47
TRIM28-201ENST00000253024 PPFIBP1Q86W92 1011 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 SAP30BPQ9UHR5 308 aaKnown RBP24.22■■□□□ 1.47
TRIM28-201ENST00000253024 CEP131Q9UPN4 1083 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 MORC2Q9Y6X9 1032 aaPredicted RBP24.22■■□□□ 1.47
TRIM28-201ENST00000253024 TRIM49BA6NDI0 452 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 ZSCAN12O43309 604 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 SARSP49591 514 aaKnown RBP24.22■■□□□ 1.47
TRIM28-201ENST00000253024 PLCD1P51178 756 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 DIXDC1Q155Q3 683 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 TMTC2Q8N394 836 aa24.22■■□□□ 1.47
TRIM28-201ENST00000253024 PAPPAQ13219 1627 aa24.21■■□□□ 1.47
TRIM28-201ENST00000253024 FAM237AA0A1B0GTK4 181 aa24.21■■□□□ 1.47
TRIM28-201ENST00000253024 RNF225M0QZC1 329 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-201ENST00000253024 ENOX1Q8TC92 643 aaKnown RBP24.21■■□□□ 1.47
TRIM28-201ENST00000253024 PHF20Q9BVI0 1012 aa24.21■■□□□ 1.47
TRIM28-201ENST00000253024 RNF26Q9BY78 433 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-201ENST00000253024 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.21■■□□□ 1.47
TRIM28-201ENST00000253024 USP17L3A6NCW0 530 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms