RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 BRAPQ7Z569 592 aa16.49■□□□□ 0.23
SDF2-201ENST00000247020 METTL16Q86W50 562 aaKnown RBP16.49■□□□□ 0.23
SDF2-201ENST00000247020 FOXP4Q8IVH2 680 aaPredicted RBP16.49■□□□□ 0.23
SDF2-201ENST00000247020 PNMA1Q8ND90 353 aa16.49■□□□□ 0.23
SDF2-201ENST00000247020 SLC26A6Q9BXS9 759 aa16.49■□□□□ 0.23
SDF2-201ENST00000247020 DDX49Q9Y6V7 483 aaKnown RBP16.49■□□□□ 0.23
SDF2-201ENST00000247020 MYH4Q9Y623 1939 aa16.48■□□□□ 0.23
SDF2-201ENST00000247020 PRPF3O43395 683 aaKnown RBP16.48■□□□□ 0.23
SDF2-201ENST00000247020 NCLP19338 710 aaKnown RBP16.48■□□□□ 0.23
SDF2-201ENST00000247020 TMTC3Q6ZXV5 915 aa16.48■□□□□ 0.23
SDF2-201ENST00000247020 FERMT3Q86UX7 667 aa16.48■□□□□ 0.23
SDF2-201ENST00000247020 PHKBQ93100 1093 aa16.48■□□□□ 0.23
SDF2-201ENST00000247020 PRMT6Q96LA8 375 aaPredicted RBP16.48■□□□□ 0.23
SDF2-201ENST00000247020 CFAP45Q9UL16 551 aa16.48■□□□□ 0.23
SDF2-201ENST00000247020 IGKV6D-41A0A0C4DH26 115 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 SHMT1P34896 483 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 AKAP17AQ02040 695 aaKnown RBP16.47■□□□□ 0.23
SDF2-201ENST00000247020 FUT2Q10981 343 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 TRIM29Q14134 588 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 SPDYE2Q495Y8 402 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 USP48Q86UV5 1035 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 ZBED3Q96IU2 234 aaPredicted RBP16.47■□□□□ 0.23
SDF2-201ENST00000247020 ZNF396Q96N95 335 aaPredicted RBP16.47■□□□□ 0.23
SDF2-201ENST00000247020 TDRD3Q9H7E2 651 aaKnown RBP16.47■□□□□ 0.23
SDF2-201ENST00000247020 CNPY2Q9Y2B0 182 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 FZD9O00144 591 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 TOP1P11387 765 aaKnown RBP16.47■□□□□ 0.23
SDF2-201ENST00000247020 XBP1P17861 261 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 GRM4Q14833 912 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 NLGN2Q8NFZ4 835 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 TMEM47Q9BQJ4 181 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 LZTS2Q9BRK4 669 aa16.47■□□□□ 0.23
SDF2-201ENST00000247020 SBF1O95248 1867 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 CNTNAP5Q8WYK1 1306 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 MYO1BO43795 1136 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 EIF6P56537 245 aaKnown RBP16.46■□□□□ 0.23
SDF2-201ENST00000247020 UBE2HP62256 183 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 FOXD4L6Q3SYB3 417 aaPredicted RBP16.46■□□□□ 0.23
SDF2-201ENST00000247020 FOXD4L3Q6VB84 417 aaPredicted RBP16.46■□□□□ 0.23
SDF2-201ENST00000247020 DPF2Q92785 391 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 ZNF70Q9UC06 446 aaPredicted RBP16.46■□□□□ 0.23
SDF2-201ENST00000247020 STX8Q9UNK0 236 aa16.46■□□□□ 0.23
SDF2-201ENST00000247020 DDTLA6NHG4 134 aaPredicted RBP16.45■□□□□ 0.22
SDF2-201ENST00000247020 SMARCA1P28370 1054 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 ZNF280AP59817 542 aaPredicted RBP16.45■□□□□ 0.22
SDF2-201ENST00000247020 GSE1Q14687 1217 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 KRT40Q6A162 431 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 TATDN1Q6P1N9 297 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 FAM83AQ86UY5 434 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 FAM177A1Q8N128 213 aaPredicted RBP16.45■□□□□ 0.22
SDF2-201ENST00000247020 FAM151AQ8WW52 585 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 CEP95Q96GE4 821 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 CHAMP1Q96JM3 812 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 TRIM34Q9BYJ4 488 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 MTMR4Q9NYA4 1195 aa16.45■□□□□ 0.22
SDF2-201ENST00000247020 HERC5Q9UII4 1024 aaKnown RBP16.45■□□□□ 0.22
SDF2-201ENST00000247020 ZBTB12Q9Y330 459 aaPredicted RBP16.45■□□□□ 0.22
SDF2-201ENST00000247020 FIBPO43427 364 aa16.44■□□□□ 0.22
SDF2-201ENST00000247020 CACNB3P54284 484 aa16.44■□□□□ 0.22
SDF2-201ENST00000247020 KIF23Q02241 960 aaPredicted RBP16.44■□□□□ 0.22
SDF2-201ENST00000247020 TCP10Q12799 353 aa16.44■□□□□ 0.22
SDF2-201ENST00000247020 SH3BP5LQ7L8J4 393 aa16.44■□□□□ 0.22
SDF2-201ENST00000247020 ZSCAN29Q8IWY8 852 aaPredicted RBP16.44■□□□□ 0.22
SDF2-201ENST00000247020 ZFPM1Q8IX07 1006 aa16.44■□□□□ 0.22
SDF2-201ENST00000247020 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.44■□□□□ 0.22
SDF2-201ENST00000247020 PPFIA3O75145 1194 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 PLEKHA8P1O95397 391 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 TTLL1O95922 423 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 AKR1B1P15121 316 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 U2AF2P26368 475 aaKnown RBP eCLIP16.43■□□□□ 0.22
SDF2-201ENST00000247020 GUCY1B3Q02153 619 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 RASSF7Q02833 373 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 SAFBQ15424 915 aaKnown RBP eCLIP16.43■□□□□ 0.22
SDF2-201ENST00000247020 GPT2Q8TD30 523 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 DNAJC18Q9H819 358 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 MYOZ2Q9NPC6 264 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 MAD2L2Q9UI95 211 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 PALM3A6NDB9 673 aaPredicted RBP16.43■□□□□ 0.22
SDF2-201ENST00000247020 MMP1P03956 469 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 FOSBP53539 338 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 SPATA32Q96LK8 384 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 GDPD2Q9HCC8 539 aa16.43■□□□□ 0.22
SDF2-201ENST00000247020 PKN1Q16512 942 aa16.42■□□□□ 0.22
SDF2-201ENST00000247020 CERKLQ49MI3 558 aaPredicted RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 MYSM1Q5VVJ2 828 aa16.42■□□□□ 0.22
SDF2-201ENST00000247020 SRBD1Q8N5C6 995 aaKnown RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 LEO1Q8WVC0 666 aaPredicted RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 SYAP1Q96A49 352 aaPredicted RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 AIFM3Q96NN9 605 aa16.42■□□□□ 0.22
SDF2-201ENST00000247020 SPZ1Q9BXG8 430 aa16.42■□□□□ 0.22
SDF2-201ENST00000247020 FOXP1Q9H334 677 aaPredicted RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 ISY1Q9ULR0 285 aaKnown RBP16.42■□□□□ 0.22
SDF2-201ENST00000247020 CNTNAP1P78357 1384 aa16.41■□□□□ 0.22
SDF2-201ENST00000247020 WNT10BO00744 389 aa16.41■□□□□ 0.22
SDF2-201ENST00000247020 TBC1D12O60347 775 aa16.41■□□□□ 0.22
SDF2-201ENST00000247020 PARP1P09874 1014 aaKnown RBP16.41■□□□□ 0.22
SDF2-201ENST00000247020 SNHG28P0DPA3 235 aa16.41■□□□□ 0.22
SDF2-201ENST00000247020 LMNB1P20700 586 aa16.41■□□□□ 0.22
SDF2-201ENST00000247020 GUCY1A2P33402 732 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms