RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 RRAGBQ5VZM2 374 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 ATL3Q6DD88 541 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 SLC44A5Q8NCS7 719 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 ESR2Q92731 530 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 CELF1Q92879 486 aaKnown RBP13.02□□□□□ -0.33
SOX9-201ENST00000245479 CCDC87Q9NVE4 849 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 ANKARQ7Z5J8 1434 aa13.02□□□□□ -0.33
SOX9-201ENST00000245479 PRDX5P30044 214 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 TUBB4BP68371 445 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 EXOSC10Q01780 885 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 ZNF654Q8IZM8 581 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 BANK1Q8NDB2 785 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 SLC4A9Q96Q91 983 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 CDC5LQ99459 802 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 PARD6BQ9BYG5 372 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 SAMSN1Q9NSI8 373 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 PAFAH1B1P43034 410 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 RABGGTAQ92696 567 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 STRBPQ96SI9 672 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 FAN1Q9Y2M0 1017 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 AGLP35573 1532 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 AKR1B15C9JRZ8 316 aaPredicted RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 TXLNAP40222 546 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 KRI1Q8N9T8 703 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 NLRP3Q96P20 1036 aa13.01□□□□□ -0.33
SOX9-201ENST00000245479 LLPHQ9BRT6 129 aaKnown RBP13.01□□□□□ -0.33
SOX9-201ENST00000245479 TANGO6Q9C0B7 1094 aa13□□□□□ -0.33
SOX9-201ENST00000245479 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13□□□□□ -0.33
SOX9-201ENST00000245479 PPP1R1BQ9UD71 204 aaPredicted RBP13□□□□□ -0.33
SOX9-201ENST00000245479 CASP7P55210 303 aa13□□□□□ -0.33
SOX9-201ENST00000245479 ST5P78524 1137 aa13□□□□□ -0.33
SOX9-201ENST00000245479 PPARAQ07869 468 aa13□□□□□ -0.33
SOX9-201ENST00000245479 STIM1Q13586 685 aa13□□□□□ -0.33
SOX9-201ENST00000245479 SPA17Q15506 151 aa13□□□□□ -0.33
SOX9-201ENST00000245479 ZNF444Q8N0Y2 327 aaPredicted RBP13□□□□□ -0.33
SOX9-201ENST00000245479 IRX2Q9BZI1 471 aaPredicted RBP13□□□□□ -0.33
SOX9-201ENST00000245479 POLD4Q9HCU8 107 aa13□□□□□ -0.33
SOX9-201ENST00000245479 ZKSCAN7Q9P0L1 754 aaPredicted RBP13□□□□□ -0.33
SOX9-201ENST00000245479 BCCIPQ9P287 314 aaKnown RBP eCLIP13□□□□□ -0.33
SOX9-201ENST00000245479 RIPOR2Q9Y4F9 1068 aa13□□□□□ -0.33
SOX9-201ENST00000245479 NDUFAB1O14561 156 aa13□□□□□ -0.33
SOX9-201ENST00000245479 USP17L8P0C7I0 530 aa13□□□□□ -0.33
SOX9-201ENST00000245479 PRR29P0C7W0 189 aa13□□□□□ -0.33
SOX9-201ENST00000245479 AMOTL1Q8IY63 956 aa13□□□□□ -0.33
SOX9-201ENST00000245479 PSMB7Q99436 277 aa13□□□□□ -0.33
SOX9-201ENST00000245479 SOS2Q07890 1332 aaPredicted RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 USP42Q9H9J4 1324 aaKnown RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 TRIM75PA6NK02 468 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 CYP19A1P11511 503 aaPredicted RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 GBP2P32456 591 aaPredicted RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 FANCBQ8NB91 859 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 TGFBRAP1Q8WUH2 860 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 RFC4P35249 363 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 ILDR1Q86SU0 546 aaPredicted RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 MB21D2Q8IYB1 491 aaPredicted RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
SOX9-201ENST00000245479 ISCA1Q9BUE6 129 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 CSRNP2Q9H175 543 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 CCDC194A0A1B0GVG4 234 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 HSF2BPO75031 334 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 RBM6P78332 1123 aaKnown RBP12.99□□□□□ -0.33
SOX9-201ENST00000245479 PTPROQ16827 1216 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 SARM1Q6SZW1 724 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 HPS5Q9UPZ3 1129 aa12.99□□□□□ -0.33
SOX9-201ENST00000245479 PHLPP2Q6ZVD8 1323 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 GOLGA6CA6NDK9 693 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 GOLGA6DP0CG33 693 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CKAP4Q07065 602 aaKnown RBP12.98□□□□□ -0.33
SOX9-201ENST00000245479 RASGRP2Q7LDG7 609 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 IGSF22Q8N9C0 903 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 NAPGQ99747 312 aaPredicted RBP12.98□□□□□ -0.33
SOX9-201ENST00000245479 KRT23Q9C075 422 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 UBA5Q9GZZ9 404 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 KAT14Q9H8E8 782 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 EPB41L4AQ9HCS5 686 aaPredicted RBP12.98□□□□□ -0.33
SOX9-201ENST00000245479 GOLGA6AQ9NYA3 693 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CEP131Q9UPN4 1083 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 UBN2Q6ZU65 1347 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CCDC151A5D8V7 595 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CCDC178Q5BJE1 867 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CC2D1AQ6P1N0 951 aaPredicted RBP12.98□□□□□ -0.33
SOX9-201ENST00000245479 C3orf67Q6ZVT6 689 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 FUCA2Q9BTY2 467 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 ZNF652Q9Y2D9 606 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 TSPY3P0CV98 308 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 TSPY8P0CW00 308 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 LETM2Q2VYF4 491 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 MAATS1Q7Z4T9 603 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 NOSTRINQ8IVI9 506 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 FAM204AQ9H8W3 233 aa12.98□□□□□ -0.33
SOX9-201ENST00000245479 CCDC196A0A1B0GTZ2 297 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 USP17L3A6NCW0 530 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 USP17L4A6NCW7 530 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 SH2B2O14492 632 aaPredicted RBP12.97□□□□□ -0.33
SOX9-201ENST00000245479 MRPS25P82663 173 aaKnown RBP12.97□□□□□ -0.33
SOX9-201ENST00000245479 TFAP4Q01664 338 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 HLTFQ14527 1009 aaKnown RBP eCLIP12.97□□□□□ -0.33
SOX9-201ENST00000245479 SHC4Q6S5L8 630 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 USP17L1Q7RTZ2 530 aa12.97□□□□□ -0.33
SOX9-201ENST00000245479 BRAPQ7Z569 592 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms