RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 TDRD7Q8NHU6 1098 aaKnown RBP4.9□□□□□ -1.62
CHD9-201ENST00000219084 SNRNP27Q8WVK2 155 aaKnown RBP4.9□□□□□ -1.62
CHD9-201ENST00000219084 SEC62Q99442 399 aaKnown RBP4.9□□□□□ -1.62
CHD9-201ENST00000219084 ZKSCAN3Q9BRR0 538 aa4.9□□□□□ -1.62
CHD9-201ENST00000219084 DDX23Q9BUQ8 820 aaKnown RBP4.9□□□□□ -1.62
CHD9-201ENST00000219084 IFIH1Q9BYX4 1025 aaKnown RBP4.9□□□□□ -1.62
CHD9-201ENST00000219084 PPP1R12CQ9BZL4 782 aa4.9□□□□□ -1.62
CHD9-201ENST00000219084 TRIM35Q9UPQ4 493 aa4.9□□□□□ -1.62
CHD9-201ENST00000219084 ADGRB3O60242 1522 aa4.9□□□□□ -1.62
CHD9-201ENST00000219084 DDAH1O94760 285 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 BRD2P25440 801 aaKnown RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 EEF1GP26641 437 aaKnown RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 CEP57Q86XR8 500 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 SLFN12Q8IYM2 578 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 AK8Q96MA6 479 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 SUDS3Q9H7L9 328 aaPredicted RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 SPINK5Q9NQ38 1064 aaPredicted RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 WDR19Q8NEZ3 1342 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 CETN3O15182 167 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 PPP6R2O75170 966 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 COPS6Q7L5N1 327 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 DRC1Q96MC2 740 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 EYA3Q99504 573 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 TUBB6Q9BUF5 446 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 GPR108Q9NPR9 543 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 ARPP21Q9UBL0 812 aaPredicted RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 MYO3AQ8NEV4 1616 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 PHACTR2O75167 634 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 MCM7P33993 719 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 KIF11P52732 1056 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 SLC8A3P57103 927 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 CCDC144CPQ8IYA2 1237 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 RNF10Q8N5U6 811 aaKnown RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 ABCC3O15438 1527 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 ZEB2O60315 1214 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 PTCD1O75127 700 aaKnown RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 LDHBP07195 334 aaKnown RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 TFCP2Q12800 502 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 CSGALNACT2Q8N6G5 542 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 SMC1BQ8NDV3 1235 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 RGS22Q8NE09 1264 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 ZNF830Q96NB3 372 aaPredicted RBP4.9□□□□□ -1.63
CHD9-201ENST00000219084 ODF2LQ9ULJ1 636 aa4.9□□□□□ -1.63
CHD9-201ENST00000219084 ABCC12Q96J65 1359 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CIAO1O76071 339 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RHOXF2BP0C7M4 288 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 MTHFSDQ2M296 383 aaKnown RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 TTC38Q5R3I4 469 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CCDC82Q8N4S0 544 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 SSH3Q8TE77 659 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 HAUS1Q96CS2 278 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RHOXF2Q9BQY4 288 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 SH3TC1Q8TE82 1336 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 SEMA3EO15041 775 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 POLR2DO15514 142 aaKnown RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 ZNF189O75820 626 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 LONP1P36776 959 aaKnown RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 NEDD9Q14511 834 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 GKAP1Q5VSY0 366 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 ALS2CLQ60I27 953 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CLEC17AQ6ZS10 378 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 IFT81Q8WYA0 676 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 EXOC4Q96A65 974 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 TRIM11Q96F44 468 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 MYCBPQ99417 103 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 AFDNP55196 1824 aaKnown RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 HSPA6P17066 643 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 OAS2P29728 719 aaKnown RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 HOXC9P31274 260 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 ELF2Q15723 593 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 LMBR1LQ6UX01 489 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 TBC1D22AQ8WUA7 517 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 TSC1Q92574 1164 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CAPZA3Q96KX2 299 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CARD14Q9BXL6 1004 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 HYOU1Q9Y4L1 999 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 MRVI1Q9Y6F6 885 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RNF40O75150 1001 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RPS6KA1Q15418 735 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 GBP7Q8N8V2 638 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 ZSWIM4Q9H7M6 989 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RTEL1Q9NZ71 1219 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 VWA3AA6NCI4 1184 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 RCAN1P53805 252 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 ORC2Q13416 577 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 ZSCAN26Q16670 478 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 PHLDB3Q6NSJ2 640 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 OR8K1Q8NGG5 319 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 MCUR1Q96AQ8 359 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 FOXP1Q9H334 677 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 ATG3Q9NT62 314 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CCDC151A5D8V7 595 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 P4HA1P13674 534 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CEP85LQ5SZL2 805 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 NOSTRINQ8IVI9 506 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 CCDC170Q8IYT3 715 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 FNBP4Q8N3X1 1017 aaPredicted RBP4.89□□□□□ -1.63
CHD9-201ENST00000219084 NELFBQ8WX92 580 aa4.89□□□□□ -1.63
CHD9-201ENST00000219084 LPIN2Q92539 896 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms