RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 RNPC3Q96LT9 517 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 AIFM3Q96NN9 605 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 NBPF3Q9H094 633 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 A1CFQ9NQ94 594 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 DACH1Q9UI36 760 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 U3KPZ7 1027 aaPredicted RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 CCNI2Q6ZMN8 369 aaPredicted RBP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 SMYD4Q8IYR2 804 aaPredicted RBP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 LMBR1Q8WVP7 490 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 VCPKMTQ9H867 229 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 MAP2P11137 1827 aaKnown RBP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 MROH7-TTC4A0A0A0MT08 1334 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 POLR2DO15514 142 aaKnown RBP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 ZPR1O75312 459 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 CKAP4Q07065 602 aaKnown RBP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 GOLGA6L10A6NI86 522 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 FXR1P51114 621 aaKnown RBP eCLIP16.44■□□□□ 0.22
PTPRA-201ENST00000216877 HSPA2P54652 639 aa16.44■□□□□ 0.22
PTPRA-201ENST00000216877 DLG5Q8TDM6 1919 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 KLF18A0A0U1RQI7 1052 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 CXCR5P32302 372 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 SLC8A1P32418 973 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 SLC9C2Q5TAH2 1124 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 NLRP2Q9NX02 1062 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 WWC3Q9ULE0 1092 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 TMCO5BA8MYB1 307 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 CNGA4Q8IV77 575 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 FOXP4Q8IVH2 680 aaPredicted RBP16.43■□□□□ 0.22
PTPRA-201ENST00000216877 STAMBPL1Q96FJ0 436 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 CCDC43Q96MW1 224 aaKnown RBP16.43■□□□□ 0.22
PTPRA-201ENST00000216877 NEUROD6Q96NK8 337 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 SBNO1A3KN83 1393 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 KLHL33A6NCF5 533 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 RWDD2BP57060 319 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 CPLX4Q7Z7G2 160 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 NLRP14Q86W24 1093 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 CCDC82Q8N4S0 544 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 HDAC7Q8WUI4 952 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 STAMQ92783 540 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 FAM184BQ9ULE4 1060 aa16.43■□□□□ 0.22
PTPRA-201ENST00000216877 SHOX2O60902 331 aaPredicted RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 PDIA3P30101 505 aaKnown RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 RNASE9P60153 205 aaKnown RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 TBX2Q13207 712 aaPredicted RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 TRIM29Q14134 588 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 METTL16Q86W50 562 aaKnown RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 RPUSD2Q8IZ73 545 aaKnown RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CNKSR2Q8WXI2 1034 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 ZCWPW1Q9H0M4 648 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 L3MBTL1Q9Y468 752 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 GRIN2DO15399 1336 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CARMIL3Q8ND23 1372 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 ATF3P18847 181 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 RANBP1P43487 201 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 ADCY2Q08462 1091 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 TRIM68Q6AZZ1 485 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CCDC50Q8IVM0 306 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 SMARCAL1Q9NZC9 954 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 PIK3C2AO00443 1686 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 HGSO14964 777 aaPredicted RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CASP1P29466 404 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CWF19L2Q2TBE0 894 aaKnown RBP16.42■□□□□ 0.22
PTPRA-201ENST00000216877 PANX2Q96RD6 677 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 CHP1Q99653 195 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 SERTAD1Q9UHV2 236 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 MAN1B1Q9UKM7 699 aa16.42■□□□□ 0.22
PTPRA-201ENST00000216877 KIF28PB7ZC32 967 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 SNUPNO95149 360 aaKnown RBP16.41■□□□□ 0.22
PTPRA-201ENST00000216877 TMTC1Q8IUR5 882 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 FUKQ8N0W3 1084 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 CCDC26Q8TAB7 109 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 A0A0G2JLW4 131 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 POLA2Q14181 598 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 SHC4Q6S5L8 630 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 MSL3Q8N5Y2 521 aaKnown RBP16.41■□□□□ 0.22
PTPRA-201ENST00000216877 TAB2Q9NYJ8 693 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 DMGDHQ9UI17 866 aaKnown RBP16.41■□□□□ 0.22
PTPRA-201ENST00000216877 ESYT3A0FGR9 886 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 MFAP3LO75121 409 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 NR1D1P20393 614 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 HLTFQ14527 1009 aaKnown RBP eCLIP16.41■□□□□ 0.22
PTPRA-201ENST00000216877 IQCEQ6IPM2 695 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 STOX1Q6ZVD7 989 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 SPATS2Q86XZ4 545 aaKnown RBP16.41■□□□□ 0.22
PTPRA-201ENST00000216877 LRRC1Q9BTT6 524 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 MAPK8IP1Q9UQF2 711 aa16.41■□□□□ 0.22
PTPRA-201ENST00000216877 POSTNQ15063 836 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 NBPF14Q5TI25 921 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 PUS7Q96PZ0 661 aaKnown RBP16.4■□□□□ 0.22
PTPRA-201ENST00000216877 POLR3EQ9NVU0 708 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 EPN1Q9Y6I3 576 aaPredicted RBP16.4■□□□□ 0.22
PTPRA-201ENST00000216877 TTC39AQ5SRH9 613 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 CYP26C1Q6V0L0 522 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 MAEAQ7L5Y9 396 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 RASGRP2Q7LDG7 609 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 EHBP1Q8NDI1 1231 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 PAIP2Q9BPZ3 127 aaKnown RBP16.4■□□□□ 0.22
PTPRA-201ENST00000216877 EPN3Q9H201 632 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 MRPL12P52815 198 aaKnown RBP16.4■□□□□ 0.22
PTPRA-201ENST00000216877 SPAG5Q96R06 1193 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms