RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CAMK1DQ8IU85 385 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ATP6V0A1Q93050 837 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SIRT1Q96EB6 747 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM7Q9C029 511 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 EFCC1Q9HA90 598 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DOLKQ9UPQ8 538 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 NSD3Q9BZ95 1437 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8RI6L899 631 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 OSBPP22059 807 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KRT85P78386 507 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DRP2Q13474 957 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DCTN2Q13561 401 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KRBA2Q6ZNG9 492 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF804AQ7Z570 1209 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC134Q9H6E4 229 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 OGFRQ9NZT2 677 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ANGPTL3Q9Y5C1 460 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MLYCDO95822 493 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PPP1R2P41236 205 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GRIN1Q05586 938 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MPRIPQ6WCQ1 1025 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 HDXQ7Z353 690 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ABCA7Q8IZY2 2146 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TBC1D5Q92609 795 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ZSWIM6Q9HCJ5 1215 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 STOML1Q9UBI4 398 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TACC3Q9Y6A5 838 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF7P0C2Y1 421 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MAN1A1P33908 653 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SMTNP53814 917 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CAMK4Q16566 473 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TTC23LQ6PF05 361 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 INTS8Q75QN2 995 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CACNA2D4Q7Z3S7 1137 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 NCAPG2Q86XI2 1143 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ATP2A3Q93084 1043 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 IWS1Q96ST2 819 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 AZI2Q9H6S1 392 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 BCAP29Q9UHQ4 241 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ST20-MTHFSA0A0A6YYL1 179 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ACTN1P12814 892 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MTHFSP49914 203 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KIAA1841Q6NSI8 718 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CTCFLQ8NI51 663 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CXorf38Q8TB03 319 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KLHDC4Q8TBB5 520 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KCNG4Q8TDN1 519 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ABTB1Q969K4 478 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 COA7Q96BR5 231 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 RGL1Q9NZL6 768 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8JA6NMD2 632 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GNRH1P01148 92 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PCYT1AP49585 367 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 EXOSC10Q01780 885 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 LMNB2Q03252 620 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GABPAQ06546 454 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 NUTM1Q86Y26 1132 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DACT3Q96B18 629 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MAK16Q9BXY0 300 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MFSD1Q9H3U5 465 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 VPS18Q9P253 973 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DAAM1Q9Y4D1 1078 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TOP1P11387 765 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PRIM1P49642 420 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 BIRC3Q13489 604 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TAF7Q15545 349 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TRPV6Q9H1D0 765 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PIDD1Q9HB75 910 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGEF10LQ9HCE6 1279 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PUF60Q9UHX1 559 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 MRFAP1Q9Y605 127 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 C6orf229H3BNL8 230 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CREB3O43889 395 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 URI1O94763 535 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 FCHSD2O94868 740 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 BRD1O95696 1058 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PLS1Q14651 629 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ZMYND11Q15326 602 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CLUL1Q15846 466 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 NECAB1Q8N987 351 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TCP11Q8WWU5 503 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC138Q96M89 665 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 POLE4Q9NR33 117 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 EHD2Q9NZN4 543 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DDX19BQ9UMR2 479 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 PTPREP23469 700 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MARCKSP29966 332 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MCM4P33991 863 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 INPP1P49441 399 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 NLRP6P59044 892 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SKOR1P84550 965 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KRT32Q14532 448 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TAS1R3Q7RTX0 852 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CPLX4Q7Z7G2 160 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 HAUS1Q96CS2 278 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DAPK1P53355 1430 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MED12LQ86YW9 2145 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms