RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 MSANTD4Q8NCY6 345 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 KLHDC4Q8TBB5 520 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 PHF23Q9BUL5 403 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 DRC3Q9H069 523 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 ZCWPW1Q9H0M4 648 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 SUGCTQ9HAC7 445 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 DKK3Q9UBP4 350 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 EIF4E1BA6NMX2 242 aaKnown RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 SPECC1L-ADORA2AF8WAN1 911 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 USO1O60763 962 aaKnown RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 PDHA1P08559 390 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 FSIP1Q8NA03 581 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 IRX2Q9BZI1 471 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 RAB21Q9UL25 225 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 HPCAL4Q9UM19 191 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 TSC22D4Q9Y3Q8 395 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF608Q9ULD9 1512 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 POLR1AO95602 1720 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 HPDP32754 393 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 NAA35Q5VZE5 725 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 CCDC174Q6PII3 467 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 CRELD2Q6UXH1 353 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 KCTD17Q8N5Z5 321 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 PAF1Q8N7H5 531 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 TSR2Q969E8 191 aaKnown RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 HIC2Q96JB3 615 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 EIF2AQ9BY44 585 aaKnown RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 SIL1Q9H173 461 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 NRDE2Q9H7Z3 1164 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 RGS12O14924 1447 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 SLC3A2P08195 630 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 VIMP08670 466 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ATP2A2P16615 1042 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PSMA5P28066 241 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 AMPHP49418 695 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 VAV2P52735 878 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 DIXDC1Q155Q3 683 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TMEM154Q6P9G4 183 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TBC1D1Q86TI0 1168 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TTC6Q86TZ1 520 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CTTNBP2NLQ9P2B4 639 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 KDM5BQ9UGL1 1544 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 YEATS2Q9ULM3 1422 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 RASSF9O75901 435 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 AARSP49588 968 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 BLMHQ13867 455 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ANKRD1Q15327 319 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 NBPF14Q5TI25 921 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ALS2CLQ60I27 953 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CLMNQ96JQ2 1002 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TSPYL2Q9H2G4 693 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 DACH1Q9UI36 760 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TTF2Q9UNY4 1162 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 NUTM2FA1L443 756 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CCDC160A6NGH7 325 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 STX10O60499 249 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 MBD4O95243 580 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 MAP4K4O95819 1239 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ABL2P42684 1182 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 THOC7Q6I9Y2 204 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 TTLL7Q6ZT98 887 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 C11orf57Q6ZUT1 292 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 SLF2Q8IX21 1173 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PEX5LQ8IYB4 626 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ARHGAP45Q92619 1136 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CCT8L2Q96SF2 557 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 ESYT1Q9BSJ8 1104 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PRELID1Q9Y255 219 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 STK38LQ9Y2H1 464 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PRXQ9BXM0 1461 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 KDM1AO60341 852 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 SLC4A2P04920 1241 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 GSTA2P09210 222 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 MYBL1P10243 752 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PUS10Q3MIT2 529 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CFAP157Q5JU67 520 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 PHLDB2Q86SQ0 1253 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CCDC197Q8NCU1 140 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CENPKQ9BS16 269 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 CHMP2BQ9UQN3 213 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 R3HDM2Q9Y2K5 976 aaKnown RBP6.38□□□□□ -1.39
SCN1A-216ENST00000637968 FAM135AQ9P2D6 1515 aa6.38□□□□□ -1.39
SCN1A-216ENST00000637968 H7C1W4 665 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 ABLIM1O14639 778 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 SHOX2O60902 331 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-216ENST00000637968 NR1I2O75469 434 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 PPP1R37O75864 691 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 GNAI3P08754 354 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 PAFAH1B1P43034 410 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 FNTAP49354 379 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 NNTQ13423 1086 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 STK38Q15208 465 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF394Q53GI3 561 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 FAAH2Q6GMR7 532 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 SPATA24Q86W54 205 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 RIN2Q8WYP3 895 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-216ENST00000637968 RAB3IPQ96QF0 476 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-216ENST00000637968 SELENOOQ9BVL4 669 aa6.37□□□□□ -1.39
SCN1A-216ENST00000637968 DMAP1Q9NPF5 467 aaPredicted RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms