RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	MCM3	P25205	808 aa		12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	REST	Q13127	1097 aa		12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	MAGEC3	Q8TD91	643 aa		12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	N4BP2L2	Q92802	583 aa	Predicted RBP	12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	TRMT112	Q9UI30	125 aa	Known RBP	12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	ODF2L	Q9ULJ1	636 aa		12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	ZNF652	Q9Y2D9	606 aa		12.21	□□□□□ -0.45
CHD2-223	ENST00000636306	IKBKB	O14920	756 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	RNF40	O75150	1001 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	RTN2	O75298	545 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	FAM160A1	Q05DH4	1040 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	PLCB4	Q15147	1175 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	LRRC24	Q50LG9	513 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	METTL24	Q5JXM2	366 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	AP1AR	Q63HQ0	302 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	DDX46	Q7L014	1031 aa	Known RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	FERMT3	Q86UX7	667 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	CCDC50	Q8IVM0	306 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	ENGASE	Q8NFI3	743 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	FAM89A	Q96GI7	184 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	CDC23	Q9UJX2	597 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	CCDC9	Q9Y3X0	531 aa	Known RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	IRS4	O14654	1257 aa	Predicted RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	RGL2	O15211	777 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	RNF113A	O15541	343 aa	Known RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	CLSTN1	O94985	981 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	NEFH	P12036	1026 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	ARHGAP25	P42331	645 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	INHBE	P58166	350 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	TTF1	Q15361	905 aa	Predicted RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	ZMYM1	Q5SVZ6	1142 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	NAIF1	Q69YI7	327 aa	Predicted RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	ARMC2	Q8NEN0	867 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	TATDN2	Q93075	761 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	DHX58	Q96C10	678 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	CALR3	Q96L12	384 aa	Known RBP	12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.2	□□□□□ -0.46	9e-8	■■□□□ 11.5
CHD2-223	ENST00000636306	ETAA1	Q9NY74	926 aa		12.2	□□□□□ -0.46
CHD2-223	ENST00000636306	SCN7A	Q01118	1682 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	ITGA6	P23229	1130 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	FANCC	Q00597	558 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	PPFIA1	Q13136	1202 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	WDR93	Q6P2C0	686 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	FAM173B	Q6P4H8	233 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	IQCA1	Q86XH1	822 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	ZNF34	Q8IZ26	560 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	ZNF594	Q96JF6	807 aa	Predicted RBP	12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	WDR24	Q96S15	920 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	CNNM1	Q9NRU3	951 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	RTL9	Q8NET4	1388 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	MROH5	Q6ZUA9	1318 aa		12.19	□□□□□ -0.46
CHD2-223	ENST00000636306	DDX60	Q8IY21	1712 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	MPHOSPH10	O00566	681 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	STX10	O60499	249 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	UQCRFS1P1	P0C7P4	283 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	CCT5	P48643	541 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	RWDD2B	P57060	319 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	HLF	Q16534	295 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	ADCK5	Q3MIX3	580 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	LDHAL6A	Q6ZMR3	332 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	MICALCL	Q6ZW33	695 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	TTLL11	Q8NHH1	800 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	NEK1	Q96PY6	1258 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	SLC4A9	Q96Q91	983 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	PAGR1	Q9BTK6	254 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	CAPN7	Q9Y6W3	813 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	LAMA4	Q16363	1823 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	LOC102724428	A0A0B4J2F2	783 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306		A0A0G2JS52	829 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	NUTM2E	B1AL46	878 aa	Predicted RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	WDHD1	O75717	1129 aa	Predicted RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	KIAA0754	O94854	1291 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	SYF2	O95926	243 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	PAX7	P23759	505 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	CRKL	P46109	303 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	SIK1	P57059	783 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	SLC8A3	P57103	927 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	NLRP12	P59046	1061 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	TIMM10	P62072	90 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	TBC1D8B	Q0IIM8	1120 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	TRAF1	Q13077	416 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	ISM2	Q6H9L7	571 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	YTHDF3	Q7Z739	585 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	VSTM4	Q8IW00	320 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	EDC3	Q96F86	508 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	CLIC6	Q96NY7	704 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	PNKP	Q96T60	521 aa		12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	LARP6	Q9BRS8	491 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.18	□□□□□ -0.46
CHD2-223	ENST00000636306	ATRN	O75882	1429 aa		12.17	□□□□□ -0.46
CHD2-223	ENST00000636306	NHS	Q6T4R5	1651 aa		12.17	□□□□□ -0.46
CHD2-223	ENST00000636306	IRAK1	P51617	712 aa		12.17	□□□□□ -0.46
CHD2-223	ENST00000636306	SMTN	P53814	917 aa		12.17	□□□□□ -0.46
CHD2-223	ENST00000636306	WHAMMP3	Q1A5X7	153 aa		12.17	□□□□□ -0.46
CHD2-223	ENST00000636306	TMEM139	Q8IV31	216 aa		12.17	□□□□□ -0.46

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