RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 HOXA7P31268 230 aaPredicted RBP22.45■■□□□ 1.18
CLN3-241ENST00000635861 PALD1Q9ULE6 856 aa22.45■■□□□ 1.18
CLN3-241ENST00000635861 MYH8P13535 1937 aa22.44■■□□□ 1.18
CLN3-241ENST00000635861 UBE2Q1Q7Z7E8 422 aa22.44■■□□□ 1.18
CLN3-241ENST00000635861 HTATIP2Q9BUP3 242 aa22.44■■□□□ 1.18
CLN3-241ENST00000635861 MORF4L1Q9UBU8 362 aa22.44■■□□□ 1.18
CLN3-241ENST00000635861 EXOC6BQ9Y2D4 811 aa22.44■■□□□ 1.18
CLN3-241ENST00000635861 USP17L10C9JJH3 530 aa22.43■■□□□ 1.18
CLN3-241ENST00000635861 IRX3P78415 501 aaPredicted RBP22.43■■□□□ 1.18
CLN3-241ENST00000635861 MTMR2Q13614 643 aa22.43■■□□□ 1.18
CLN3-241ENST00000635861 TTF1Q15361 905 aaPredicted RBP22.43■■□□□ 1.18
CLN3-241ENST00000635861 AACSQ86V21 672 aa22.43■■□□□ 1.18
CLN3-241ENST00000635861 RPAP2Q8IXW5 612 aaPredicted RBP22.43■■□□□ 1.18
CLN3-241ENST00000635861 U2AF1L4Q8WU68 220 aaKnown RBP22.43■■□□□ 1.18
CLN3-241ENST00000635861 EHD4Q9H223 541 aa22.43■■□□□ 1.18
CLN3-241ENST00000635861 ZBTB21Q9ULJ3 1066 aa22.43■■□□□ 1.18
CLN3-241ENST00000635861 MYH7P12883 1935 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 SGPL1O95470 568 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 INHAP05111 366 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 USP5P45974 858 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 DYNLL1P63167 89 aaKnown RBP22.42■■□□□ 1.18
CLN3-241ENST00000635861 MAGEB6Q8N7X4 407 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 PANK1Q8TE04 598 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 GTF3C2Q8WUA4 911 aaPredicted RBP22.42■■□□□ 1.18
CLN3-241ENST00000635861 UNC93B1Q9H1C4 597 aa22.42■■□□□ 1.18
CLN3-241ENST00000635861 CHMP4BQ9H444 224 aaKnown RBP22.42■■□□□ 1.18
CLN3-241ENST00000635861 HMMRO75330 724 aa22.41■■□□□ 1.18
CLN3-241ENST00000635861 TTC6Q86TZ1 520 aa22.41■■□□□ 1.18
CLN3-241ENST00000635861 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.41■■□□□ 1.18
CLN3-241ENST00000635861 DDX19BQ9UMR2 479 aa22.41■■□□□ 1.18
CLN3-241ENST00000635861 ELNP15502 786 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 TATDN1Q6P1N9 297 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 CLASRPQ8N2M8 674 aaKnown RBP22.4■■□□□ 1.18
CLN3-241ENST00000635861 RHPN1Q8TCX5 695 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 KIF1BPQ96EK5 621 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 PAK6Q9NQU5 681 aaPredicted RBP22.4■■□□□ 1.18
CLN3-241ENST00000635861 SAP30BPQ9UHR5 308 aaKnown RBP22.4■■□□□ 1.18
CLN3-241ENST00000635861 SERPINB13Q9UIV8 391 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 GDF11O95390 407 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 MIGA1Q8NAN2 632 aa22.4■■□□□ 1.18
CLN3-241ENST00000635861 TRIOBPQ9H2D6 2365 aa22.39■■□□□ 1.18
CLN3-241ENST00000635861 FARP2O94887 1054 aaPredicted RBP22.39■■□□□ 1.17
CLN3-241ENST00000635861 HMGCRP04035 888 aa22.39■■□□□ 1.17
CLN3-241ENST00000635861 JAG1P78504 1218 aa22.39■■□□□ 1.17
CLN3-241ENST00000635861 USP17L2Q6R6M4 530 aa22.39■■□□□ 1.17
CLN3-241ENST00000635861 DPF3Q92784 378 aa22.39■■□□□ 1.17
CLN3-241ENST00000635861 ANTXR1Q9H6X2 564 aa22.39■■□□□ 1.17
CLN3-241ENST00000635861 H0YGN5 161 aa22.38■■□□□ 1.17
CLN3-241ENST00000635861 HERVK_113P62684 666 aa22.38■■□□□ 1.17
CLN3-241ENST00000635861 C12orf42Q96LP6 360 aa22.38■■□□□ 1.17
CLN3-241ENST00000635861 GJD2Q9UKL4 321 aa22.38■■□□□ 1.17
CLN3-241ENST00000635861 GPRC5AQ8NFJ5 357 aa22.37■■□□□ 1.17
CLN3-241ENST00000635861 SOCS4Q8WXH5 440 aa22.37■■□□□ 1.17
CLN3-241ENST00000635861 P2RX7Q99572 595 aaKnown RBP22.37■■□□□ 1.17
CLN3-241ENST00000635861 RIOK1Q9BRS2 568 aaKnown RBP22.37■■□□□ 1.17
CLN3-241ENST00000635861 CRISPLD2Q9H0B8 497 aa22.37■■□□□ 1.17
CLN3-241ENST00000635861 IL1RAPL2Q9NP60 686 aa22.37■■□□□ 1.17
CLN3-241ENST00000635861 TAOK2Q9UL54 1235 aa22.37■■□□□ 1.17
CLN3-241ENST00000635861 RAB11FIP3O75154 756 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 USP14P54578 494 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 ALPK3Q96L96 1907 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 DEFB118Q96PH6 123 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 ZBTB40Q9NUA8 1239 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 COLQQ9Y215 455 aaPredicted RBP22.36■■□□□ 1.17
CLN3-241ENST00000635861 NDUFB9Q9Y6M9 179 aa22.36■■□□□ 1.17
CLN3-241ENST00000635861 GH2P01242 217 aa22.35■■□□□ 1.17
CLN3-241ENST00000635861 MAPK4P31152 587 aa22.35■■□□□ 1.17
CLN3-241ENST00000635861 TRMT44Q8IYL2 757 aaKnown RBP22.35■■□□□ 1.17
CLN3-241ENST00000635861 ANKLE1Q8NAG6 615 aa22.35■■□□□ 1.17
CLN3-241ENST00000635861 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.35■■□□□ 1.17
CLN3-241ENST00000635861 NR2E3Q9Y5X4 410 aa22.35■■□□□ 1.17
CLN3-241ENST00000635861 RPTORQ8N122 1335 aa22.34■■□□□ 1.17
CLN3-241ENST00000635861 MAGEB6P1A0A0J9YX57 407 aa22.34■■□□□ 1.17
CLN3-241ENST00000635861 TFRCP02786 760 aaKnown RBP22.34■■□□□ 1.17
CLN3-241ENST00000635861 IFIT2P09913 472 aaKnown RBP22.34■■□□□ 1.17
CLN3-241ENST00000635861 XRCC5P13010 732 aaKnown RBP22.34■■□□□ 1.17
CLN3-241ENST00000635861 CERKLQ49MI3 558 aaPredicted RBP22.34■■□□□ 1.17
CLN3-241ENST00000635861 NUDT12Q9BQG2 462 aa22.34■■□□□ 1.17
CLN3-241ENST00000635861 CRNKL1Q9BZJ0 848 aaKnown RBP22.34■■□□□ 1.17
CLN3-241ENST00000635861 CABP5Q9NP86 173 aa22.34■■□□□ 1.17
CLN3-241ENST00000635861 EMILIN3Q9NT22 766 aa22.34■■□□□ 1.17
CLN3-241ENST00000635861 ERVK-9P63128 1117 aa22.33■■□□□ 1.17
CLN3-241ENST00000635861 ERVK-24P63145 666 aa22.33■■□□□ 1.17
CLN3-241ENST00000635861 SHROOM1Q2M3G4 852 aaPredicted RBP22.33■■□□□ 1.17
CLN3-241ENST00000635861 SLC9C2Q5TAH2 1124 aa22.33■■□□□ 1.17
CLN3-241ENST00000635861 FEZ1Q99689 392 aa22.33■■□□□ 1.17
CLN3-241ENST00000635861 KIAA1683Q9H0B3 1180 aa22.33■■□□□ 1.17
CLN3-241ENST00000635861 BAZ2AQ9UIF9 1905 aaKnown RBP22.33■■□□□ 1.17
CLN3-241ENST00000635861 RANBP2P49792 3224 aaKnown RBP22.33■■□□□ 1.16
CLN3-241ENST00000635861 PDE6AP16499 860 aa22.32■■□□□ 1.16
CLN3-241ENST00000635861 FXR1P51114 621 aaKnown RBP eCLIP22.32■■□□□ 1.16
CLN3-241ENST00000635861 PDE3AQ14432 1141 aa22.32■■□□□ 1.16
CLN3-241ENST00000635861 ABCB5Q2M3G0 1257 aa22.32■■□□□ 1.16
CLN3-241ENST00000635861 HMX1Q9NP08 348 aaPredicted RBP22.32■■□□□ 1.16
CLN3-241ENST00000635861 RBPJLQ9UBG7 517 aa22.32■■□□□ 1.16
CLN3-241ENST00000635861 USP17L15C9J2P7 530 aa22.31■■□□□ 1.16
CLN3-241ENST00000635861 USP17L13C9JLJ4 530 aa22.31■■□□□ 1.16
CLN3-241ENST00000635861 USP17L11C9JVI0 530 aa22.31■■□□□ 1.16
CLN3-241ENST00000635861 USP17L18D6R9N7 530 aa22.31■■□□□ 1.16
CLN3-241ENST00000635861 USP17L22D6RA61 530 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms