RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 KRT23Q9C075 422 aa17.06■□□□□ 0.32
LINC00339-208ENST00000634934 CREBZFQ9NS37 354 aa17.06■□□□□ 0.32
LINC00339-208ENST00000634934 LAMA4Q16363 1823 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 ORC4O43929 436 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 FGRP09769 529 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 PSMA5P28066 241 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 ESR2Q92731 530 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 ZNF341Q9BYN7 854 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 TAOK2Q9UL54 1235 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 FZD1Q9UP38 647 aa17.05■□□□□ 0.32
LINC00339-208ENST00000634934 SSC5DA1L4H1 1573 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 KDM4AO75164 1064 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 CASTP20810 708 aaKnown RBP17.04■□□□□ 0.32
LINC00339-208ENST00000634934 RASA1P20936 1047 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 MAP3K10Q02779 954 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 TTLL12Q14166 644 aaPredicted RBP17.04■□□□□ 0.32
LINC00339-208ENST00000634934 CERKLQ49MI3 558 aaPredicted RBP17.04■□□□□ 0.32
LINC00339-208ENST00000634934 FAM47AQ5JRC9 791 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 TATDN1Q6P1N9 297 aa17.04■□□□□ 0.32
LINC00339-208ENST00000634934 ABT1Q9ULW3 272 aaKnown RBP17.04■□□□□ 0.32
LINC00339-208ENST00000634934 SIPA1L1O43166 1804 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 TSPY2A6NKD2 308 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 MPHOSPH10O00566 681 aaKnown RBP17.03■□□□□ 0.32
LINC00339-208ENST00000634934 PPP1R12BO60237 982 aaPredicted RBP17.03■□□□□ 0.32
LINC00339-208ENST00000634934 GDF11O95390 407 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 CPA1P15085 419 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 TFAP4Q01664 338 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 MOB2Q70IA6 237 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 NKX2-3Q8TAU0 364 aa17.03■□□□□ 0.32
LINC00339-208ENST00000634934 TSPY3P0CV98 308 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 TSPY8P0CW00 308 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 AKR1B1P15121 316 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 COL9A3Q14050 684 aaPredicted RBP17.02■□□□□ 0.32
LINC00339-208ENST00000634934 BLOC1S2Q6QNY1 142 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 CHST3Q7LGC8 479 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 WRNIP1Q96S55 665 aa17.02■□□□□ 0.32
LINC00339-208ENST00000634934 UPF3BQ9BZI7 483 aaKnown RBP17.02■□□□□ 0.32
LINC00339-208ENST00000634934 PHF20L1A8MW92 1017 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 HMGB1P09429 215 aaKnown RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 RRP1BQ14684 758 aaKnown RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 ABCB5Q2M3G0 1257 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 MB21D2Q8IYB1 491 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 CCDC17Q96LX7 622 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 KIF2CQ99661 725 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 TM6SF1Q9BZW5 370 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 ZSWIM5Q9P217 1185 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 ANGEL1Q9UNK9 670 aaKnown RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 CYP46A1Q9Y6A2 500 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 USP2O75604 605 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 INPP5BP32019 993 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 MCM5P33992 734 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 IREB2P48200 963 aaKnown RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 CYB5R4Q7L1T6 521 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 SAPCD2Q86UD0 394 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 IL17RAQ96F46 866 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 TCEANC2Q96MN5 208 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 GBA2Q9HCG7 927 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 ZSWIM6Q9HCJ5 1215 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 CABP5Q9NP86 173 aa17.01■□□□□ 0.31
LINC00339-208ENST00000634934 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-208ENST00000634934 PAPPA2Q9BXP8 1791 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 PRC1O43663 620 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 GH2P01242 217 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 RPS6KB1P23443 525 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 CAP2P40123 477 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 SHROOM1Q2M3G4 852 aaPredicted RBP17■□□□□ 0.31
LINC00339-208ENST00000634934 RUFY3Q7L099 469 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 DHX32Q7L7V1 743 aaKnown RBP17■□□□□ 0.31
LINC00339-208ENST00000634934 ARMC9Q7Z3E5 817 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 DNAJC5GQ8N7S2 189 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 KLRG1Q96E93 195 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 ZKSCAN3Q9BRR0 538 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 UBAC1Q9BSL1 405 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 ZNF112Q9UJU3 913 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 TLL2Q9Y6L7 1015 aa17■□□□□ 0.31
LINC00339-208ENST00000634934 CTNND1O60716 968 aaKnown RBP16.99■□□□□ 0.31
LINC00339-208ENST00000634934 NT5C2P49902 561 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 NEK4P51957 841 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 ANTXR2P58335 489 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 JAG1P78504 1218 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 FGD1P98174 961 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 RAB3GAP1Q15042 981 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 IQCA1Q86XH1 822 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 NEDD1Q8NHV4 660 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 ZKSCAN4Q969J2 545 aaPredicted RBP16.99■□□□□ 0.31
LINC00339-208ENST00000634934 LRRC2Q9BYS8 371 aa16.99■□□□□ 0.31
LINC00339-208ENST00000634934 NMT2O60551 498 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 HUNKP57058 714 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 MAP3K9P80192 1104 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 RABEP1Q15276 862 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 TMEM179Q6ZVK1 233 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 C2orf69Q8N8R5 385 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.98■□□□□ 0.314e-7■■■■■ 38.1
LINC00339-208ENST00000634934 ZSCAN10Q96SZ4 725 aaPredicted RBP16.98■□□□□ 0.31
LINC00339-208ENST00000634934 PDRG1Q9NUG6 133 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 ZBTB21Q9ULJ3 1066 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 OTOFQ9HC10 1997 aa16.98■□□□□ 0.31
LINC00339-208ENST00000634934 UBE2Q2LH0YL09 131 aa16.97■□□□□ 0.31
LINC00339-208ENST00000634934 IFIT3O14879 490 aaKnown RBP16.97■□□□□ 0.31
LINC00339-208ENST00000634934 EXOSC10Q01780 885 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms