RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 MDM2Q00987 491 aaPredicted RBP18.09■□□□□ 0.49
PNKP-218ENST00000625299 CRACR2BQ8N4Y2 399 aaPredicted RBP18.09■□□□□ 0.49
PNKP-218ENST00000625299 WDR18Q9BV38 432 aa18.09■□□□□ 0.49
PNKP-218ENST00000625299 AATFQ9NY61 560 aaKnown RBP eCLIP18.09■□□□□ 0.49
PNKP-218ENST00000625299 MAPK4P31152 587 aa18.08■□□□□ 0.48
PNKP-218ENST00000625299 CACNB2Q08289 660 aaPredicted RBP18.08■□□□□ 0.48
PNKP-218ENST00000625299 CCL14Q16627 93 aa18.08■□□□□ 0.48
PNKP-218ENST00000625299 SHROOM1Q2M3G4 852 aaPredicted RBP18.08■□□□□ 0.48
PNKP-218ENST00000625299 MAPKAPK5Q8IW41 473 aa18.08■□□□□ 0.48
PNKP-218ENST00000625299 MAST2Q6P0Q8 1798 aa18.08■□□□□ 0.48
PNKP-218ENST00000625299 UNC80Q8N2C7 3258 aa18.08■□□□□ 0.48
PNKP-218ENST00000625299 XRCC5P13010 732 aaKnown RBP18.07■□□□□ 0.48
PNKP-218ENST00000625299 ARID4AP29374 1257 aaPredicted RBP18.07■□□□□ 0.48
PNKP-218ENST00000625299 HOXA7P31268 230 aaPredicted RBP18.07■□□□□ 0.48
PNKP-218ENST00000625299 RGS2P41220 211 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 MCAMP43121 646 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 JAG1P78504 1218 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 LRRC26Q2I0M4 334 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 TRMT44Q8IYL2 757 aaKnown RBP18.07■□□□□ 0.48
PNKP-218ENST00000625299 TGFBRAP1Q8WUH2 860 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 PORCNQ9H237 461 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 DHX36Q9H2U1 1008 aaKnown RBP18.07■□□□□ 0.48
PNKP-218ENST00000625299 RBPJLQ9UBG7 517 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 CDK5RAP2Q96SN8 1893 aa18.07■□□□□ 0.48
PNKP-218ENST00000625299 USP17L10C9JJH3 530 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 BAG3O95817 575 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 GNAI3P08754 354 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 ERVK-9P63128 1117 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 ERVK-24P63145 666 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 Q3C1V9 767 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 NAA16Q6N069 864 aaPredicted RBP18.06■□□□□ 0.48
PNKP-218ENST00000625299 GPR142Q7Z601 462 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 DNAJC18Q9H819 358 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 SNRKQ9NRH2 765 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 ZBTB21Q9ULJ3 1066 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 FRMPD3Q5JV73 1810 aa18.06■□□□□ 0.48
PNKP-218ENST00000625299 FLT1P17948 1338 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 ZNF316A6NFI3 1004 aaPredicted RBP18.05■□□□□ 0.48
PNKP-218ENST00000625299 C19orf81C9J6K1 198 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 COL6A1P12109 1028 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 WDR78Q5VTH9 848 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 PLEKHH3Q7Z736 793 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 APBA2Q99767 749 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 SAP30BPQ9UHR5 308 aaKnown RBP18.05■□□□□ 0.48
PNKP-218ENST00000625299 PALD1Q9ULE6 856 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 FOCADQ5VW36 1801 aa18.05■□□□□ 0.48
PNKP-218ENST00000625299 UQCRFS1P1P0C7P4 283 aa18.04■□□□□ 0.48
PNKP-218ENST00000625299 PLCG2P16885 1265 aa18.04■□□□□ 0.48
PNKP-218ENST00000625299 G3BP1Q13283 466 aaKnown RBP eCLIP18.04■□□□□ 0.48
PNKP-218ENST00000625299 ZYXQ15942 572 aaKnown RBP18.04■□□□□ 0.48
PNKP-218ENST00000625299 LHX8Q68G74 356 aa18.04■□□□□ 0.48
PNKP-218ENST00000625299 NDUFB9Q9Y6M9 179 aa18.04■□□□□ 0.48
PNKP-218ENST00000625299 MTX1Q13505 466 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 TTC39AQ5SRH9 613 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 MORN1Q5T089 497 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 GTF3C2Q8WUA4 911 aaPredicted RBP18.03■□□□□ 0.48
PNKP-218ENST00000625299 USP6NLQ92738 828 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 FAM161BQ96MY7 647 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 FEZ1Q99689 392 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 LBHD1Q9BQE6 289 aaPredicted RBP18.03■□□□□ 0.48
PNKP-218ENST00000625299 EMILIN3Q9NT22 766 aa18.03■□□□□ 0.48
PNKP-218ENST00000625299 HLA-DOAP06340 250 aa18.02■□□□□ 0.48
PNKP-218ENST00000625299 USP17L2Q6R6M4 530 aa18.02■□□□□ 0.48
PNKP-218ENST00000625299 ADGRA1Q86SQ6 560 aa18.02■□□□□ 0.48
PNKP-218ENST00000625299 FOXP4Q8IVH2 680 aaPredicted RBP18.02■□□□□ 0.48
PNKP-218ENST00000625299 COL25A1Q9BXS0 654 aaPredicted RBP18.02■□□□□ 0.48
PNKP-218ENST00000625299 SENP6Q9GZR1 1112 aaPredicted RBP18.02■□□□□ 0.48
PNKP-218ENST00000625299 MYO5AQ9Y4I1 1855 aaKnown RBP18.02■□□□□ 0.48
PNKP-218ENST00000625299 DNAH12Q6ZR08 3092 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 GH2P01242 217 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 CT47B1P0C2W7 299 aaPredicted RBP18.01■□□□□ 0.47
PNKP-218ENST00000625299 CNGA1P29973 690 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 ATN1P54259 1190 aaPredicted RBP18.01■□□□□ 0.47
PNKP-218ENST00000625299 MAP2K5Q13163 448 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 MFSD14CQ5VZR4 134 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.01■□□□□ 0.47
PNKP-218ENST00000625299 GINM1Q9NU53 330 aa18.01■□□□□ 0.47
PNKP-218ENST00000625299 LAMA2P24043 3122 aaKnown RBP18■□□□□ 0.47
PNKP-218ENST00000625299 PNMA6EA0A0J9YXQ4 647 aa18■□□□□ 0.47
PNKP-218ENST00000625299 GLRX3O76003 335 aaKnown RBP18■□□□□ 0.47
PNKP-218ENST00000625299 PPP4CP60510 307 aa18■□□□□ 0.47
PNKP-218ENST00000625299 POTEEQ6S8J3 1075 aa18■□□□□ 0.47
PNKP-218ENST00000625299 ATF7IPQ6VMQ6 1270 aa18■□□□□ 0.47
PNKP-218ENST00000625299 EDC3Q96F86 508 aaKnown RBP18■□□□□ 0.47
PNKP-218ENST00000625299 GUCD1Q96NT3 240 aa18■□□□□ 0.47
PNKP-218ENST00000625299 FLRT1Q9NZU1 646 aa18■□□□□ 0.47
PNKP-218ENST00000625299 MYH1P12882 1939 aa18■□□□□ 0.47
PNKP-218ENST00000625299 GNAI2P04899 355 aa17.99■□□□□ 0.47
PNKP-218ENST00000625299 DYNLL1P63167 89 aaKnown RBP17.99■□□□□ 0.47
PNKP-218ENST00000625299 CCNA1P78396 465 aa17.99■□□□□ 0.47
PNKP-218ENST00000625299 CCDC158Q5M9N0 1113 aa17.99■□□□□ 0.47
PNKP-218ENST00000625299 METTL16Q86W50 562 aaKnown RBP17.99■□□□□ 0.47
PNKP-218ENST00000625299 TRMT2AQ8IZ69 625 aaKnown RBP17.99■□□□□ 0.47
PNKP-218ENST00000625299 DBNDD2Q9BQY9 259 aa17.99■□□□□ 0.47
PNKP-218ENST00000625299 PRKAG2Q9UGJ0 569 aa17.99■□□□□ 0.47
PNKP-218ENST00000625299 USP17L15C9J2P7 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L13C9JLJ4 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L11C9JVI0 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L18D6R9N7 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L22D6RA61 530 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms