RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 UBA5Q9GZZ9 404 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 FRMPD2Q68DX3 1309 aaPredicted RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 EP400Q96L91 3159 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 PODNQ7Z5L7 613 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 NAP1L5Q96NT1 182 aaPredicted RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 ZBTB12Q9Y330 459 aaPredicted RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 PES1O00541 588 aaKnown RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 CLEC17AQ6ZS10 378 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 UBE2Q2LH0YL09 131 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 CRKP46108 304 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 PLCD1P51178 756 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 DHX8Q14562 1220 aaKnown RBP18.09■□□□□ 0.49
CPSF1-213ENST00000620219 GPKOWQ92917 476 aaPredicted RBP eCLIP18.09■□□□□ 0.491e-6■□□□□ 10.4
CPSF1-213ENST00000620219 CTDNEP1O95476 244 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 TPM4P67936 248 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 PIM2Q9P1W9 311 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 DAGLAQ9Y4D2 1042 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 MYH14Q7Z406 1995 aaKnown RBP18.09■□□□□ 0.49
CPSF1-213ENST00000620219 PLEKHA8P1O95397 391 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 CDK8P49336 464 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 EVX2Q03828 476 aa18.09■□□□□ 0.49
CPSF1-213ENST00000620219 FOXP2O15409 715 aa18.08■□□□□ 0.49
CPSF1-213ENST00000620219 LIFRP42702 1097 aa18.08■□□□□ 0.49
CPSF1-213ENST00000620219 GNAQP50148 359 aa18.08■□□□□ 0.49
CPSF1-213ENST00000620219 TPD52L1Q16890 204 aaPredicted RBP18.08■□□□□ 0.49
CPSF1-213ENST00000620219 DALRD3Q5D0E6 543 aaKnown RBP18.08■□□□□ 0.49
CPSF1-213ENST00000620219 RBM28Q9NW13 759 aaKnown RBP18.08■□□□□ 0.49
CPSF1-213ENST00000620219 HOOK1Q9UJC3 728 aaKnown RBP18.08■□□□□ 0.49
CPSF1-213ENST00000620219 A0A087WWV3 80 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 PRKG1Q13976 671 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 TRIM5Q9C035 493 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 CCDC178Q5BJE1 867 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 ZNF174Q15697 407 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 ARHGAP27Q6ZUM4 889 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 SERPINB13Q9UIV8 391 aa18.08■□□□□ 0.48
CPSF1-213ENST00000620219 COL22A1Q8NFW1 1626 aaPredicted RBP18.07■□□□□ 0.48
CPSF1-213ENST00000620219 RGL2O15211 777 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 GDF11O95390 407 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 ZNF445P59923 1031 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 CCDC173Q0VFZ6 552 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 MYSM1Q5VVJ2 828 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 BRAPQ7Z569 592 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 KRT2P35908 639 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 PIK3AP1Q6ZUJ8 805 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 CERS3Q8IU89 383 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 KCNG4Q8TDN1 519 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 IGDCC4Q8TDY8 1250 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 AKT1S1Q96B36 256 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 UIMC1Q96RL1 719 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 DDX19AQ9NUU7 478 aaKnown RBP18.07■□□□□ 0.48
CPSF1-213ENST00000620219 MCM7P33993 719 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 CLEC10AQ8IUN9 316 aa18.07■□□□□ 0.48
CPSF1-213ENST00000620219 GOLGB1Q14789 3259 aaKnown RBP18.06■□□□□ 0.48
CPSF1-213ENST00000620219 NR1I2O75469 434 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 ANO1Q5XXA6 986 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 MRPS27Q92552 414 aaKnown RBP18.06■□□□□ 0.48
CPSF1-213ENST00000620219 CEP131Q9UPN4 1083 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 NR5A1Q13285 461 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 USP17L2Q6R6M4 530 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 NKX2-3Q8TAU0 364 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 NUP98P52948 1817 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 GLI3P10071 1580 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 GOLGA6L6A8MZA4 724 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 HOXA10P31260 410 aaPredicted RBP18.06■□□□□ 0.48
CPSF1-213ENST00000620219 CFAP100Q494V2 611 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 CNNM3Q8NE01 707 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 RRP36Q96EU6 259 aaKnown RBP18.06■□□□□ 0.48
CPSF1-213ENST00000620219 CLIC4Q9Y696 253 aa18.06■□□□□ 0.48
CPSF1-213ENST00000620219 TRIM75PA6NK02 468 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 KLRF2D3W0D1 207 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 CDK11BP21127 795 aaKnown RBP18.05■□□□□ 0.48
CPSF1-213ENST00000620219 CRY2Q49AN0 593 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 CSRNP1Q96S65 589 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 TXLNAP40222 546 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 RESTQ13127 1097 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 SYKP43405 635 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 C12orf60Q5U649 245 aa18.05■□□□□ 0.48
CPSF1-213ENST00000620219 N4BP2Q86UW6 1770 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-213ENST00000620219 KIAA2012Q0VF49 1180 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 MIGA2Q7L4E1 593 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 RTKN2Q8IZC4 609 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 SHANK3Q9BYB0 1731 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 TCHHQ07283 1943 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 CERKLQ49MI3 558 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-213ENST00000620219 NBPF3Q9H094 633 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 GUCY1A2P33402 732 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 SSBP05455 408 aaKnown RBP eCLIP18.04■□□□□ 0.48
CPSF1-213ENST00000620219 SLC1A4P43007 532 aa18.04■□□□□ 0.48
CPSF1-213ENST00000620219 UBR2Q8IWV8 1755 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 IFNAR1P17181 557 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 CC2D2BQ6DHV5 1058 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 SPICE1Q8N0Z3 855 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 RASGRP4Q8TDF6 673 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 DNAJC25Q9H1X3 360 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 ALDH8A1Q9H2A2 487 aaPredicted RBP18.03■□□□□ 0.48
CPSF1-213ENST00000620219 TAOK3Q9H2K8 898 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 FDPSP14324 419 aaKnown RBP18.03■□□□□ 0.48
CPSF1-213ENST00000620219 JAKMIP3Q5VZ66 844 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 CDK5RAP3Q96JB5 506 aa18.03■□□□□ 0.48
CPSF1-213ENST00000620219 FLT1P17948 1338 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms