RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FANCBQ8NB91 859 aa16.58■□□□□ 0.25
SHROOM1-208ENST00000617339 MKNK2Q9HBH9 465 aa16.58■□□□□ 0.25
SHROOM1-208ENST00000617339 FAM217BQ9NTX9 383 aaPredicted RBP16.58■□□□□ 0.25
SHROOM1-208ENST00000617339 PARP4Q9UKK3 1724 aaKnown RBP16.58■□□□□ 0.25
SHROOM1-208ENST00000617339 ZNF804BA4D1E1 1349 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 ROBO1Q9Y6N7 1651 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 CDC25AP30304 524 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 PICALMQ13492 652 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 KLHL10Q6JEL2 608 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 DISP2A7MBM2 1401 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 TOGARAM1Q9Y4F4 1720 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 ST5P78524 1137 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 SYT10Q6XYQ8 523 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 ERO1AQ96HE7 468 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 LRRC4BQ9NT99 713 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 ADAMTS7Q9UKP4 1686 aa16.58■□□□□ 0.24
SHROOM1-208ENST00000617339 SLURP2P0DP57 97 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 ZNF174Q15697 407 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 USP49Q70CQ1 688 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 IQCA1Q86XH1 822 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 HOMER1Q86YM7 354 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 ZNF384Q8TF68 577 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 TMEM87BQ96K49 555 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 PLIN2Q99541 437 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 TMX1Q9H3N1 280 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 NARFQ9UHQ1 456 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 RPS6KA4O75676 772 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 UFL1O94874 794 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 GOLGA8FQ08AF8 430 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 GOLGA8DPQ0D2H9 430 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 KRT27Q7Z3Y8 459 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 TDRD7Q8NHU6 1098 aaKnown RBP16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 PCDHB6Q9Y5E3 794 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 RFX7Q2KHR2 1363 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 TAF1P21675 1872 aa16.57■□□□□ 0.24
SHROOM1-208ENST00000617339 RASGRP4Q8TDF6 673 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 NYXQ9GZU5 481 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 CNNM3Q8NE01 707 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 USP17L3A6NCW0 530 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 USP17L4A6NCW7 530 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 ARHGAP29Q52LW3 1261 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 ADALQ6DHV7 355 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 USP17L1Q7RTZ2 530 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 ENAHQ8N8S7 591 aaPredicted RBP16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 MXD3Q9BW11 206 aa16.56■□□□□ 0.24
SHROOM1-208ENST00000617339 GLI3P10071 1580 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 UBE4AQ14139 1066 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 CATIPQ7Z7H3 387 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 CEP57L1Q8IYX8 460 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 FAM177A1Q8N128 213 aaPredicted RBP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 GPKOWQ92917 476 aaPredicted RBP eCLIP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 CNNM2Q9H8M5 875 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 RTEL1Q9NZ71 1219 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 SALL1Q9NSC2 1324 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 BMS1Q14692 1282 aaKnown RBP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 STX1AQ16623 288 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 KCNG4Q8TDN1 519 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 POLR2DO15514 142 aaKnown RBP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 CTR9Q6PD62 1173 aa16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 RNF41Q9H4P4 317 aaPredicted RBP16.55■□□□□ 0.24
SHROOM1-208ENST00000617339 SEC31AO94979 1220 aaKnown RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 TFAP4Q01664 338 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 IKQ13123 557 aaPredicted RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 LONRF3Q496Y0 759 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 CLEC4GQ6UXB4 293 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 BARGINQ6ZT62 677 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 ANO10Q9NW15 660 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 SLIT2O94813 1529 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 N4BP2Q86UW6 1770 aaPredicted RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 MROH7-TTC4A0A0A0MT08 1334 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 LDHBP07195 334 aaKnown RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 CLCN6P51797 869 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 TRMT44Q8IYL2 757 aaKnown RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 CCAR2Q8N163 923 aaKnown RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 ZSCAN10Q96SZ4 725 aaPredicted RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 EPC1Q9H2F5 836 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 ZCCHC17Q9NP64 241 aaKnown RBP16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 CRYBG1Q9Y4K1 1723 aa16.54■□□□□ 0.24
SHROOM1-208ENST00000617339 ATP1A3P13637 1013 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 NTRK3Q16288 839 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 DOK7Q18PE1 504 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 NSUN4Q96CB9 384 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 CRNKL1Q9BZJ0 848 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 IFNKQ9P0W0 207 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 MPHOSPH10O00566 681 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 STX17P56962 302 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 FMR1NBQ8N0W7 255 aaPredicted RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 SH3RF3Q8TEJ3 882 aaPredicted RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 DHX8Q14562 1220 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 VPS72Q15906 364 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 EARS2Q5JPH6 523 aaKnown RBP16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 DHX58Q96C10 678 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 EEF2KMTQ96G04 330 aa16.53■□□□□ 0.24
SHROOM1-208ENST00000617339 SHC4Q6S5L8 630 aa16.52■□□□□ 0.24
SHROOM1-208ENST00000617339 RIOK1Q9BRS2 568 aaKnown RBP16.52■□□□□ 0.24
SHROOM1-208ENST00000617339 MYH14Q7Z406 1995 aaKnown RBP16.52■□□□□ 0.24
SHROOM1-208ENST00000617339 MYO5AQ9Y4I1 1855 aaKnown RBP16.52■□□□□ 0.24
SHROOM1-208ENST00000617339 GNAT2P19087 354 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms