RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SLC26A8Q96RN1 970 aa7.16□□□□□ -1.26
LINC00540-201ENST00000611481 DAGLAQ9Y4D2 1042 aa7.16□□□□□ -1.26
LINC00540-201ENST00000611481 NKTRP30414 1462 aaKnown RBP7.16□□□□□ -1.26
LINC00540-201ENST00000611481 KIF3BO15066 747 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 DYNC1LI2O43237 492 aaPredicted RBP7.15□□□□□ -1.26
LINC00540-201ENST00000611481 B3GALT4O96024 378 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 ZNF574Q6ZN55 896 aaPredicted RBP7.15□□□□□ -1.26
LINC00540-201ENST00000611481 C14orf37Q86TY3 774 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 MISP3Q96FF7 219 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 TRIM56Q9BRZ2 755 aaKnown RBP7.15□□□□□ -1.26
LINC00540-201ENST00000611481 CCDC87Q9NVE4 849 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 SYNGAP1Q96PV0 1343 aa7.15□□□□□ -1.26
LINC00540-201ENST00000611481 ATRNO75882 1429 aa7.15□□□□□ -1.27
LINC00540-201ENST00000611481 INO80Q9ULG1 1556 aaPredicted RBP7.15□□□□□ -1.27
LINC00540-201ENST00000611481 UBR1Q8IWV7 1749 aa7.15□□□□□ -1.27
LINC00540-201ENST00000611481 CEP350Q5VT06 3117 aa7.14□□□□□ -1.27
LINC00540-201ENST00000611481 AOC2O75106 756 aa7.14□□□□□ -1.27
LINC00540-201ENST00000611481 ECEL1O95672 775 aa7.14□□□□□ -1.27
LINC00540-201ENST00000611481 ZNF648Q5T619 568 aaPredicted RBP7.14□□□□□ -1.27
LINC00540-201ENST00000611481 SPRED2Q7Z698 418 aa7.14□□□□□ -1.27
LINC00540-201ENST00000611481 ARHGAP23Q9P227 1491 aa7.14□□□□□ -1.27
LINC00540-201ENST00000611481 MAST1Q9Y2H9 1570 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 SLIT1O75093 1534 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 RTEL1-TNFRSF6BF6WH68 1400 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 SETD5Q9C0A6 1442 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 PDE3AQ14432 1141 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 BRINP3Q76B58 766 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 WFDC3Q8IUB2 231 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 LRRC59Q96AG4 307 aaKnown RBP7.13□□□□□ -1.27
LINC00540-201ENST00000611481 LGR6Q9HBX8 967 aa7.13□□□□□ -1.27
LINC00540-201ENST00000611481 PPP1R1BQ9UD71 204 aaPredicted RBP7.13□□□□□ -1.27
LINC00540-201ENST00000611481 PNPLA6Q8IY17 1366 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 TMEM88BA6NKF7 163 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 ATF3P18847 181 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 AP3B2Q13367 1082 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 KIAA0319Q5VV43 1072 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 ATG4DQ86TL0 474 aaPredicted RBP7.12□□□□□ -1.27
LINC00540-201ENST00000611481 WDR18Q9BV38 432 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 ZNF576Q9H609 170 aa7.12□□□□□ -1.27
LINC00540-201ENST00000611481 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
LINC00540-201ENST00000611481 ABL1P00519 1130 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 NEFLP07196 543 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 ITPKAP23677 461 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 BNIP3Q12983 259 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 NETO1Q8TDF5 533 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 PPP1R9AQ9ULJ8 1098 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 CAMTA1Q9Y6Y1 1673 aa7.11□□□□□ -1.27
LINC00540-201ENST00000611481 DHX29Q7Z478 1369 aaKnown RBP7.1□□□□□ -1.27
LINC00540-201ENST00000611481 DBX1A6NMT0 343 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 FARP2O94887 1054 aaPredicted RBP7.1□□□□□ -1.27
LINC00540-201ENST00000611481 FUT4P22083 530 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 KRTAP4-9Q9BYQ8 210 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 EHD4Q9H223 541 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 PIDD1Q9HB75 910 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 RC3H2Q9HBD1 1191 aaKnown RBP7.1□□□□□ -1.27
LINC00540-201ENST00000611481 UNC13BO14795 1591 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 ERVK-7P63135 1459 aa7.1□□□□□ -1.27
LINC00540-201ENST00000611481 FAM87AP0C7U9 286 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 ZNF124Q15973 351 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 PKN1Q16512 942 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 PLD6Q8N2A8 252 aaKnown RBP7.09□□□□□ -1.27
LINC00540-201ENST00000611481 GLIS3Q8NEA6 775 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 DDX17Q92841 729 aaKnown RBP7.09□□□□□ -1.27
LINC00540-201ENST00000611481 ANO2Q9NQ90 1003 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 VAV3Q9UKW4 847 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 CDC42BPAQ5VT25 1732 aa7.09□□□□□ -1.27
LINC00540-201ENST00000611481 TMEM2Q9UHN6 1383 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 NINLQ9Y2I6 1382 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 ASXL1Q8IXJ9 1541 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 TMPRSS2O15393 492 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 SLFN14P0C7P3 912 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 CD8BP10966 210 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 PRKCQQ04759 706 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 PTPN12Q05209 780 aaKnown RBP7.08□□□□□ -1.28
LINC00540-201ENST00000611481 CDK5R2Q13319 367 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 ZNF211Q13398 564 aaPredicted RBP7.08□□□□□ -1.28
LINC00540-201ENST00000611481 USPL1Q5W0Q7 1092 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 FAM181AQ8N9Y4 354 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 TMEM40Q8WWA1 233 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 FAM168AQ92567 244 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 ATXN3LQ9H3M9 355 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 C19orf44Q9H6X5 657 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 CRIM1Q9NZV1 1036 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 BRPF3Q9ULD4 1205 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 CAMSAP2Q08AD1 1489 aa7.08□□□□□ -1.28
LINC00540-201ENST00000611481 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 TET3O43151 1660 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 BRWD3Q6RI45 1802 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 RNASE1P07998 156 aaKnown RBP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 LIG1P18858 919 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 HNRNPUQ00839 825 aaKnown RBP eCLIP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 RPS26P11Q5JNZ5 115 aaPredicted RBP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 PHLDB3Q6NSJ2 640 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 PI4K2BQ8TCG2 481 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 MBNL3Q9NUK0 354 aaKnown RBP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 MROH1Q8NDA8 1641 aa7.07□□□□□ -1.28
LINC00540-201ENST00000611481 CFAP65Q6ZU64 1925 aaKnown RBP7.07□□□□□ -1.28
LINC00540-201ENST00000611481 GPATCH8Q9UKJ3 1502 aaKnown RBP7.06□□□□□ -1.28
LINC00540-201ENST00000611481 PPP1R15AO75807 674 aaPredicted RBP7.06□□□□□ -1.28
LINC00540-201ENST00000611481 ID3Q02535 119 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms