RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
VRK3-224ENST00000601849 RANBP2P49792 3224 aaKnown RBP11.69□□□□□ -0.54
VRK3-224ENST00000601849 BCAR3O75815 825 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 CYP7A1P22680 504 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 USP14P54578 494 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 HERVK_113P62684 666 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 CCNA1P78396 465 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 USP17L2Q6R6M4 530 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 TTC6Q86TZ1 520 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 METTL16Q86W50 562 aaKnown RBP11.69□□□□□ -0.54
VRK3-224ENST00000601849 P2RX7Q99572 595 aaKnown RBP11.69□□□□□ -0.54
VRK3-224ENST00000601849 DBNDD2Q9BQY9 259 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 C11orf49Q9H6J7 331 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 CABP5Q9NP86 173 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 STAP2Q9UGK3 403 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 PALD1Q9ULE6 856 aa11.69□□□□□ -0.54
VRK3-224ENST00000601849 FLT1P17948 1338 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 CYP2E1P05181 493 aaPredicted RBP11.68□□□□□ -0.54
VRK3-224ENST00000601849 ZKSCAN1P17029 563 aaPredicted RBP11.68□□□□□ -0.54
VRK3-224ENST00000601849 RGS2P41220 211 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 MAP3K12Q12852 859 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 TMEM57Q8N5G2 664 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 SSH3Q8TE77 659 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 FEZ1Q99689 392 aa11.68□□□□□ -0.54
VRK3-224ENST00000601849 SAP30BPQ9UHR5 308 aaKnown RBP11.68□□□□□ -0.54
VRK3-224ENST00000601849 CEP290O15078 2479 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L15C9J2P7 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L13C9JLJ4 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L11C9JVI0 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L18D6R9N7 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L22D6RA61 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L17D6RBQ6 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L19D6RCP7 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L20D6RJB6 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 IDH1O75874 414 aaKnown RBP11.67□□□□□ -0.54
VRK3-224ENST00000601849 GDF11O95390 407 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 PRKAR2AP13861 404 aaKnown RBP11.67□□□□□ -0.54
VRK3-224ENST00000601849 BMP8BP34820 402 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 ZAP70P43403 619 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 ERVK-9P63128 1117 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 ERVK-24P63145 666 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 USP17L24Q0WX57 530 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 POLA2Q14181 598 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 RRP1BQ14684 758 aaKnown RBP11.67□□□□□ -0.54
VRK3-224ENST00000601849 PLEKHH3Q7Z736 793 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 ERC1Q8IUD2 1116 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 C7orf61Q8IZ16 206 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 SLC17A8Q8NDX2 589 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 PAGR1Q9BTK6 254 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 PRO3102Q9H379 93 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 SERPINB13Q9UIV8 391 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 OGDHLQ9ULD0 1010 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 ZBTB21Q9ULJ3 1066 aa11.67□□□□□ -0.54
VRK3-224ENST00000601849 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.67□□□□□ -0.54
VRK3-224ENST00000601849 PHIPQ8WWQ0 1821 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 RAB3GAP1Q15042 981 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 TTF1Q15361 905 aaPredicted RBP11.66□□□□□ -0.54
VRK3-224ENST00000601849 CERKLQ49MI3 558 aaPredicted RBP11.66□□□□□ -0.54
VRK3-224ENST00000601849 HSP90AB4PQ58FF6 505 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 GPR153Q6NV75 609 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 ITPRIPQ8IWB1 547 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 TRIB2Q92519 343 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 EDC3Q96F86 508 aaKnown RBP11.66□□□□□ -0.54
VRK3-224ENST00000601849 RBPJLQ9UBG7 517 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 NOP58Q9Y2X3 529 aaKnown RBP11.66□□□□□ -0.54
VRK3-224ENST00000601849 RABGAP1Q9Y3P9 1069 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 IVNS1ABPQ9Y6Y0 642 aa11.66□□□□□ -0.54
VRK3-224ENST00000601849 PTPRFP10586 1907 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 GH2P01242 217 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 WDR78Q5VTH9 848 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 MFSD14CQ5VZR4 134 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 TATDN1Q6P1N9 297 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 GPR142Q7Z601 462 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 MAGEB6Q8N7X4 407 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 DIS3LQ8TF46 1054 aaKnown RBP11.65□□□□□ -0.54
VRK3-224ENST00000601849 CCDC8Q9H0W5 538 aaPredicted RBP11.65□□□□□ -0.54
VRK3-224ENST00000601849 EHD4Q9H223 541 aa11.65□□□□□ -0.54
VRK3-224ENST00000601849 MSCO60682 206 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 POLR3DP05423 398 aaPredicted RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 DYNLL1P63167 89 aaKnown RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 ATP2B2Q01814 1243 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 CACNB2Q08289 660 aaPredicted RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 TRIM32Q13049 653 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 MAP2K5Q13163 448 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 ZYXQ15942 572 aaKnown RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 ABCB5Q2M3G0 1257 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 Q3C1V9 767 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 MAP3K21Q5TCX8 1036 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 ADGRA1Q86SQ6 560 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 MIGA1Q8NAN2 632 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 APBA2Q99767 749 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 GDF15Q99988 308 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 UBE2OQ9C0C9 1292 aaKnown RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 TXNRD2Q9NNW7 524 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 PIH1D3Q9NQM4 214 aaKnown RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 EMILIN3Q9NT22 766 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 HOXC10Q9NYD6 342 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 ZMYND8Q9ULU4 1186 aaPredicted RBP11.64□□□□□ -0.55
VRK3-224ENST00000601849 LOC285556D6RIA3 1793 aa11.64□□□□□ -0.55
VRK3-224ENST00000601849 TRIOBPQ9H2D6 2365 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms