RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CACNB3P54284 484 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 EVCP57679 992 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 C16orf86Q6ZW13 317 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 IQCA1Q86XH1 822 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 GPC2Q8N158 579 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 NKX2-3Q8TAU0 364 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 IGDCC4Q8TDY8 1250 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 DYNLL2Q96FJ2 89 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 ZNF274Q96GC6 653 aaPredicted RBP13.65□□□□□ -0.22
VRK3-223ENST00000601341 UBAC1Q9BSL1 405 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 RBM27Q9P2N5 1060 aaKnown RBP13.65□□□□□ -0.22
VRK3-223ENST00000601341 FAM198AQ9UFP1 575 aa13.65□□□□□ -0.22
VRK3-223ENST00000601341 UTRNP46939 3433 aa13.65□□□□□ -0.23
VRK3-223ENST00000601341 SH2B2O14492 632 aaPredicted RBP13.64□□□□□ -0.23
VRK3-223ENST00000601341 GRIN3BO60391 1043 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 LIFRP42702 1097 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 APOBRQ0VD83 1088 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 TMEM67Q5HYA8 995 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 FKBP1CQ5VVH2 108 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 MICALL2Q8IY33 904 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 TMTC2Q8N394 836 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 ZBED3Q96IU2 234 aaPredicted RBP13.64□□□□□ -0.23
VRK3-223ENST00000601341 ZNF70Q9UC06 446 aaPredicted RBP13.64□□□□□ -0.23
VRK3-223ENST00000601341 CNOT7Q9UIV1 285 aaKnown RBP13.64□□□□□ -0.23
VRK3-223ENST00000601341 MTMR6Q9Y217 621 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 ELP1O95163 1332 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 ADAMTSL1Q8N6G6 1762 aa13.64□□□□□ -0.23
VRK3-223ENST00000601341 WNT10BO00744 389 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 LARGE1O95461 756 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 CDK8P49336 464 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 TCP10Q12799 353 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 FOXD4L5Q5VV16 416 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 C9orf131Q5VYM1 1079 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 ZSCAN29Q8IWY8 852 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 ZNF444Q8N0Y2 327 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 FOXD4L4Q8WXT5 416 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 CHMP4CQ96CF2 233 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 GPHNQ9NQX3 736 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 SERPINB13Q9UIV8 391 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 TAOK2Q9UL54 1235 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 NOL7Q9UMY1 257 aaKnown RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 NAV1Q8NEY1 1877 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 CLRN2A0PK11 232 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 TSPY2A6NKD2 308 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 H7C1D1 291 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 SGMS1Q86VZ5 419 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 CCDC83Q8IWF9 413 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 ZFPM1Q8IX07 1006 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 ZSCAN10Q96SZ4 725 aaPredicted RBP13.63□□□□□ -0.23
VRK3-223ENST00000601341 EHD4Q9H223 541 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 PI4KBQ9UBF8 816 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 SWAP70Q9UH65 585 aa13.63□□□□□ -0.23
VRK3-223ENST00000601341 PFKFB2O60825 505 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 MSNP26038 577 aaKnown RBP13.62□□□□□ -0.23
VRK3-223ENST00000601341 PDIA3P30101 505 aaKnown RBP13.62□□□□□ -0.23
VRK3-223ENST00000601341 GABPAQ06546 454 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 STK3Q13188 491 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 WTAPQ15007 396 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 NBPF9Q3BBW0 867 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 NFXL1Q6ZNB6 911 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 NECAB1Q8N987 351 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 SLC44A5Q8NCS7 719 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 ZKSCAN3Q9BRR0 538 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 LY9Q9HBG7 655 aa13.62□□□□□ -0.23
VRK3-223ENST00000601341 NAP1L2Q9ULW6 460 aaPredicted RBP13.62□□□□□ -0.23
VRK3-223ENST00000601341 CDK5RAP2Q96SN8 1893 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 DDX60LQ5H9U9 1706 aaKnown RBP13.61□□□□□ -0.23
VRK3-223ENST00000601341 KLF18A0A0U1RQI7 1052 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 SHTN1A0MZ66 631 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 TCP10L2B9ZVM9 353 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 ZNF500O60304 480 aaPredicted RBP13.61□□□□□ -0.23
VRK3-223ENST00000601341 RASA1P20936 1047 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 TERF1P54274 439 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 TFAP4Q01664 338 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 CCDC178Q5BJE1 867 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 FAM47AQ5JRC9 791 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 RBM26Q5T8P6 1007 aaKnown RBP13.61□□□□□ -0.23
VRK3-223ENST00000601341 FOXP4Q8IVH2 680 aaPredicted RBP13.61□□□□□ -0.23
VRK3-223ENST00000601341 FAM151AQ8WW52 585 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 GTF3C6Q969F1 213 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 VEZTQ9HBM0 779 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 CCDC39Q9UFE4 941 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 LAMB1P07942 1786 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 TNKSO95271 1327 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 ATRNL1Q5VV63 1379 aa13.61□□□□□ -0.23
VRK3-223ENST00000601341 DDTLA6NHG4 134 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 CCDC69A6NI79 296 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 TSPY3P0CV98 308 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 TSPY8P0CW00 308 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 ST3GAL1Q11201 340 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SYNE3Q6ZMZ3 975 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SAMD7Q7Z3H4 446 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 FAM83AQ86UY5 434 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 GPRC5DQ9NZD1 345 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 CNPY2Q9Y2B0 182 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SLC12A7Q9Y666 1083 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 FOCADQ5VW36 1801 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 COL2A1P02458 1487 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 GOLGA8BA8MQT2 603 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms