RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 JAG1P78504 1218 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 CRHR2Q13324 411 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 C12orf60Q5U649 245 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 GIMAP6Q6P9H5 292 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 PRRT2Q7Z6L0 340 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-215ENST00000601150 RILPL2Q969X0 211 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 SEC62Q99442 399 aaKnown RBP20.21■□□□□ 0.83
TRIM28-215ENST00000601150 R3HDMLQ9H3Y0 253 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 AS3MTQ9HBK9 375 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 ZBTB21Q9ULJ3 1066 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 LOC285556D6RIA3 1793 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 TRIM75PA6NK02 468 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 GSG1L2A8MUP6 293 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 PDE4AP27815 886 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 SHMT1P34896 483 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 EVX2Q03828 476 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 MOGSQ13724 837 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 TAF1CQ15572 869 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-215ENST00000601150 CERKLQ49MI3 558 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-215ENST00000601150 FASTKD5Q7L8L6 764 aaKnown RBP20.2■□□□□ 0.82
TRIM28-215ENST00000601150 ANKRD23Q86SG2 305 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 ZNF280CQ8ND82 737 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 ARPP21Q9UBL0 812 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-215ENST00000601150 SWAP70Q9UH65 585 aa20.2■□□□□ 0.82
TRIM28-215ENST00000601150 GH2P01242 217 aa20.19■□□□□ 0.82
TRIM28-215ENST00000601150 SPP2Q13103 211 aa20.19■□□□□ 0.82
TRIM28-215ENST00000601150 SHROOM1Q2M3G4 852 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-215ENST00000601150 CTR9Q6PD62 1173 aa20.19■□□□□ 0.82
TRIM28-215ENST00000601150 WDR18Q9BV38 432 aa20.19■□□□□ 0.82
TRIM28-215ENST00000601150 ZFYVE28Q9HCC9 887 aa20.19■□□□□ 0.82
TRIM28-215ENST00000601150 CYP2D7A0A087X1C5 515 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 PATL2C9JE40 543 aaKnown RBP20.18■□□□□ 0.82
TRIM28-215ENST00000601150 APPP05067 770 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 ABCB5Q2M3G0 1257 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 SBK1Q52WX2 424 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 GADL1Q6ZQY3 521 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 TNS4Q8IZW8 715 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 ZNF296Q8WUU4 475 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-215ENST00000601150 HELLSQ9NRZ9 838 aa20.18■□□□□ 0.82
TRIM28-215ENST00000601150 PDHXO00330 501 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 FKTNO75072 461 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 TDO2P48775 406 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 GPAT2Q6NUI2 795 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 SLC44A5Q8NCS7 719 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 DYNLL2Q96FJ2 89 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 NACAP1Q9BZK3 213 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 EPB41L4AQ9HCS5 686 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-215ENST00000601150 CABP5Q9NP86 173 aa20.17■□□□□ 0.82
TRIM28-215ENST00000601150 NEFLP07196 543 aa20.16■□□□□ 0.82
TRIM28-215ENST00000601150 CENPBP07199 599 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-215ENST00000601150 C16orf86Q6ZW13 317 aa20.16■□□□□ 0.82
TRIM28-215ENST00000601150 PROCA1Q8NCQ7 364 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-215ENST00000601150 MINDY4BA8MYZ0 360 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 SMIM22K7EJ46 135 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 SDSP20132 328 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 CDK8P49336 464 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 NMIQ13287 307 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-215ENST00000601150 MCMDC2Q4G0Z9 681 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 CCDC129Q6ZRS4 1044 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 CENPQQ7L2Z9 268 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-215ENST00000601150 IFNL3Q8IZI9 196 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 FAM227BQ96M60 508 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 SLC45A1Q9Y2W3 748 aa20.15■□□□□ 0.82
TRIM28-215ENST00000601150 ROBO3Q96MS0 1386 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 A0A0D9SFI3 127 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 TLR2O60603 784 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 HMGCS2P54868 508 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 BACE1P56817 501 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 MTMR2Q13614 643 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 RAB3GAP1Q15042 981 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 SH3D19Q5HYK7 790 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 TTC22Q5TAA0 569 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 NAPBQ9H115 298 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 AGTPBP1Q9UPW5 1226 aa20.14■□□□□ 0.81
TRIM28-215ENST00000601150 C19orf81C9J6K1 198 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 USP17L10C9JJH3 530 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 HIP1O00291 1037 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 MPHOSPH10O00566 681 aaKnown RBP20.13■□□□□ 0.81
TRIM28-215ENST00000601150 CCDC17Q96LX7 622 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 PARK7Q99497 189 aaKnown RBP20.13■□□□□ 0.81
TRIM28-215ENST00000601150 DIAPH3Q9NSV4 1193 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 TMOD4Q9NZQ9 345 aa20.13■□□□□ 0.81
TRIM28-215ENST00000601150 GUCY1A2P33402 732 aa20.12■□□□□ 0.81
TRIM28-215ENST00000601150 SP3Q02447 781 aa20.12■□□□□ 0.81
TRIM28-215ENST00000601150 DGKZQ13574 1117 aa20.12■□□□□ 0.81
TRIM28-215ENST00000601150 TMEM179Q6ZVK1 233 aa20.12■□□□□ 0.81
TRIM28-215ENST00000601150 ERO1AQ96HE7 468 aa20.12■□□□□ 0.81
TRIM28-215ENST00000601150 FOXP2O15409 715 aa20.11■□□□□ 0.81
TRIM28-215ENST00000601150 GSPT1P15170 499 aaKnown RBP20.11■□□□□ 0.81
TRIM28-215ENST00000601150 PABPC4Q13310 644 aaKnown RBP eCLIP20.11■□□□□ 0.81
TRIM28-215ENST00000601150 SEPT2Q15019 361 aa20.11■□□□□ 0.81
TRIM28-215ENST00000601150 TREML2Q5T2D2 321 aa20.11■□□□□ 0.81
TRIM28-215ENST00000601150 USP17L2Q6R6M4 530 aa20.11■□□□□ 0.81
TRIM28-215ENST00000601150 CTU1Q7Z7A3 348 aaKnown RBP20.11■□□□□ 0.81
TRIM28-215ENST00000601150 FEZ1Q99689 392 aa20.11■□□□□ 0.81
TRIM28-215ENST00000601150 GREB1LQ9C091 1923 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-215ENST00000601150 CCDC171Q6TFL3 1326 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 ADGRA2Q96PE1 1338 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 AKR1B1P15121 316 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 MFAP1P55081 439 aaKnown RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms