RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CNKSR2Q8WXI2 1034 aa23.03■■□□□ 1.28
UPF1-209ENST00000600310 ASNSP08243 561 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 PTPRAP18433 802 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 GJA5P36382 358 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 JAG1P78504 1218 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 PTH1RQ03431 593 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 PPATQ06203 517 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 CTNNA3Q9UI47 895 aa23.02■■□□□ 1.28
UPF1-209ENST00000600310 GDF11O95390 407 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 MAP2K2P36507 400 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 KIAA1211Q6ZU35 1233 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 OTUD5Q96G74 571 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 CCDC17Q96LX7 622 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 ZNF287Q9HBT7 754 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 ZBTB21Q9ULJ3 1066 aa23.01■■□□□ 1.27
UPF1-209ENST00000600310 PPIL2Q13356 520 aa23■■□□□ 1.27
UPF1-209ENST00000600310 ABCB5Q2M3G0 1257 aa23■■□□□ 1.27
UPF1-209ENST00000600310 SHROOM1Q2M3G4 852 aaPredicted RBP23■■□□□ 1.27
UPF1-209ENST00000600310 STK11IPQ8N1F8 1099 aa23■■□□□ 1.27
UPF1-209ENST00000600310 MAP4K1Q92918 833 aa23■■□□□ 1.27
UPF1-209ENST00000600310 MKNK2Q9HBH9 465 aa23■■□□□ 1.27
UPF1-209ENST00000600310 AOC2O75106 756 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 GH2P01242 217 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 CTDSPL2Q05D32 466 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 PDE4BQ07343 736 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 MKRN3Q13064 507 aaKnown RBP22.99■■□□□ 1.27
UPF1-209ENST00000600310 ZIC5Q96T25 663 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 TBC1D2Q9BYX2 928 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 LSG1Q9H089 658 aaKnown RBP22.99■■□□□ 1.27
UPF1-209ENST00000600310 CABP5Q9NP86 173 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.99■■□□□ 1.27
UPF1-209ENST00000600310 ZHX2Q9Y6X8 837 aa22.99■■□□□ 1.27
UPF1-209ENST00000600310 U3KPZ7 1027 aaPredicted RBP22.99■■□□□ 1.27
UPF1-209ENST00000600310 USP17L5A8MUK1 530 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 ZNF213O14771 459 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 IRF6O14896 467 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 FGRP09769 529 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 HSPA1AP0DMV8 641 aaKnown RBP22.98■■□□□ 1.27
UPF1-209ENST00000600310 HSPA1BP0DMV9 641 aaKnown RBP22.98■■□□□ 1.27
UPF1-209ENST00000600310 AKR1B1P15121 316 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 RASA1P20936 1047 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 HAND2P61296 217 aa22.98■■□□□ 1.27
UPF1-209ENST00000600310 KIF23Q02241 960 aaPredicted RBP22.98■■□□□ 1.27
UPF1-209ENST00000600310 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.98■■□□□ 1.27
UPF1-209ENST00000600310 GUCY1A2P33402 732 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 IMMTQ16891 758 aaKnown RBP22.97■■□□□ 1.27
UPF1-209ENST00000600310 CCDC84Q86UT8 332 aaPredicted RBP22.97■■□□□ 1.27
UPF1-209ENST00000600310 NBPF3Q9H094 633 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 ANO2Q9NQ90 1003 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 KCNH4Q9UQ05 1017 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 AFG3L2Q9Y4W6 797 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 TACC3Q9Y6A5 838 aa22.97■■□□□ 1.27
UPF1-209ENST00000600310 LAMB1P07942 1786 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 DOCK1Q14185 1865 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 MANSC4A6NHS7 340 aaPredicted RBP22.96■■□□□ 1.27
UPF1-209ENST00000600310 CXCL11O14625 94 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 PRDM1O75626 825 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 PCP11498 1178 aaKnown RBP22.96■■□□□ 1.27
UPF1-209ENST00000600310 TMEM179Q6ZVK1 233 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 REM2Q8IYK8 340 aaPredicted RBP22.96■■□□□ 1.27
UPF1-209ENST00000600310 ZNF444Q8N0Y2 327 aaPredicted RBP22.96■■□□□ 1.27
UPF1-209ENST00000600310 MS4A4AQ96JQ5 239 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 WDR18Q9BV38 432 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 AS3MTQ9HBK9 375 aa22.96■■□□□ 1.27
UPF1-209ENST00000600310 MPHOSPH10O00566 681 aaKnown RBP22.95■■□□□ 1.26
UPF1-209ENST00000600310 ORC4O43929 436 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 GTF2A2P52657 109 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 AKNAD1Q5T1N1 836 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 TBC1D10CQ8IV04 446 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 ZNF280CQ8ND82 737 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 STAG1Q8WVM7 1258 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 INCENPQ9NQS7 918 aa22.95■■□□□ 1.26
UPF1-209ENST00000600310 RBM8AQ9Y5S9 174 aaKnown RBP22.95■■□□□ 1.26
UPF1-209ENST00000600310 TESPA1A2RU30 521 aaPredicted RBP22.94■■□□□ 1.26
UPF1-209ENST00000600310 INHBEP58166 350 aa22.94■■□□□ 1.26
UPF1-209ENST00000600310 SPP2Q13103 211 aa22.94■■□□□ 1.26
UPF1-209ENST00000600310 SNAPC2Q13487 334 aa22.94■■□□□ 1.26
UPF1-209ENST00000600310 SEPT2Q15019 361 aa22.94■■□□□ 1.26
UPF1-209ENST00000600310 RAB3GAP1Q15042 981 aa22.94■■□□□ 1.26
UPF1-209ENST00000600310 RNF41Q9H4P4 317 aaPredicted RBP22.94■■□□□ 1.26
UPF1-209ENST00000600310 TM4SF4P48230 202 aa22.93■■□□□ 1.26
UPF1-209ENST00000600310 SREBF2Q12772 1141 aa22.93■■□□□ 1.26
UPF1-209ENST00000600310 MFSD6Q6ZSS7 791 aa22.93■■□□□ 1.26
UPF1-209ENST00000600310 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.93■■□□□ 1.26
UPF1-209ENST00000600310 THSD7BQ9C0I4 1608 aa22.93■■□□□ 1.26
UPF1-209ENST00000600310 CYP21A2P08686 494 aa22.92■■□□□ 1.26
UPF1-209ENST00000600310 CETPP11597 493 aa22.92■■□□□ 1.26
UPF1-209ENST00000600310 TNS4Q8IZW8 715 aa22.92■■□□□ 1.26
UPF1-209ENST00000600310 NEDD1Q8NHV4 660 aa22.92■■□□□ 1.26
UPF1-209ENST00000600310 TRIM75PA6NK02 468 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 REC8O95072 547 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 TFAP4Q01664 338 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 NECTIN1Q15223 517 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 BRI3BPQ8WY22 251 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 KANSL2Q9H9L4 492 aa22.91■■□□□ 1.26
UPF1-209ENST00000600310 ATAD5Q96QE3 1844 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 CCL15-CCL14A0A0B4J2E2 113 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 IGKV6D-41A0A0C4DH26 115 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 A0A0G2JLL6 359 aaPredicted RBP22.9■■□□□ 1.26
UPF1-209ENST00000600310 TSPY3P0CV98 308 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms