RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PRRT2Q7Z6L0 340 aaPredicted RBP16.63■□□□□ 0.25
UPF1-205ENST00000598209 AMOTL1Q8IY63 956 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 TNS4Q8IZW8 715 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 TBC1D2Q9BYX2 928 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 ZCCHC17Q9NP64 241 aaKnown RBP16.63■□□□□ 0.25
UPF1-205ENST00000598209 GINM1Q9NU53 330 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 ZBTB21Q9ULJ3 1066 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 LOC285556D6RIA3 1793 aa16.63■□□□□ 0.25
UPF1-205ENST00000598209 CYP2D7A0A087X1C5 515 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 GSG1L2A8MUP6 293 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 USP17L12C9JPN9 530 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 USP17L21D6R901 530 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 GNAT2P19087 354 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 PDE4AP27815 886 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 SHMT1P34896 483 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 CERKLQ49MI3 558 aaPredicted RBP16.62■□□□□ 0.25
UPF1-205ENST00000598209 C12orf60Q5U649 245 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 ANKRD23Q86SG2 305 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 ZNF280CQ8ND82 737 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 ZNF296Q8WUU4 475 aaPredicted RBP16.62■□□□□ 0.25
UPF1-205ENST00000598209 RILPL2Q969X0 211 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 AS3MTQ9HBK9 375 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 ZFYVE28Q9HCC9 887 aa16.62■□□□□ 0.25
UPF1-205ENST00000598209 GH2P01242 217 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 SPP2Q13103 211 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 GIMAP6Q6P9H5 292 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 CTR9Q6PD62 1173 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 GADL1Q6ZQY3 521 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 FASTKD5Q7L8L6 764 aaKnown RBP16.61■□□□□ 0.25
UPF1-205ENST00000598209 SLC44A5Q8NCS7 719 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 DYNLL2Q96FJ2 89 aa16.61■□□□□ 0.25
UPF1-205ENST00000598209 SMIM22K7EJ46 135 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 PDHXO00330 501 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 FKTNO75072 461 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 ABCB5Q2M3G0 1257 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 GPAT2Q6NUI2 795 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 TICAM2Q86XR7 235 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 WDR18Q9BV38 432 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 EPB41L4AQ9HCS5 686 aaPredicted RBP16.6■□□□□ 0.25
UPF1-205ENST00000598209 ARPP21Q9UBL0 812 aaPredicted RBP16.6■□□□□ 0.25
UPF1-205ENST00000598209 SWAP70Q9UH65 585 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 TAOK2Q9UL54 1235 aa16.6■□□□□ 0.25
UPF1-205ENST00000598209 PATL2C9JE40 543 aaKnown RBP16.59■□□□□ 0.25
UPF1-205ENST00000598209 APPP05067 770 aa16.59■□□□□ 0.25
UPF1-205ENST00000598209 SBK1Q52WX2 424 aa16.59■□□□□ 0.25
UPF1-205ENST00000598209 CCDC129Q6ZRS4 1044 aa16.59■□□□□ 0.25
UPF1-205ENST00000598209 CABP5Q9NP86 173 aa16.59■□□□□ 0.25
UPF1-205ENST00000598209 TDO2P48775 406 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 CDK8P49336 464 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 HMGCS2P54868 508 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 MTMR2Q13614 643 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 RAB3GAP1Q15042 981 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 C16orf86Q6ZW13 317 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 PROCA1Q8NCQ7 364 aaPredicted RBP16.58■□□□□ 0.24
UPF1-205ENST00000598209 FAM227BQ96M60 508 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 HELLSQ9NRZ9 838 aa16.58■□□□□ 0.24
UPF1-205ENST00000598209 A0A0D9SFI3 127 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 MINDY4BA8MYZ0 360 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 TLR2O60603 784 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 NMIQ13287 307 aaPredicted RBP16.57■□□□□ 0.24
UPF1-205ENST00000598209 DGKZQ13574 1117 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 SH3D19Q5HYK7 790 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 IFNL3Q8IZI9 196 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 NACAP1Q9BZK3 213 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 AGTPBP1Q9UPW5 1226 aa16.57■□□□□ 0.24
UPF1-205ENST00000598209 USP17L10C9JJH3 530 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 MPHOSPH10O00566 681 aaKnown RBP16.56■□□□□ 0.24
UPF1-205ENST00000598209 SDSP20132 328 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 GUCY1A2P33402 732 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 BACE1P56817 501 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 SP3Q02447 781 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 MCMDC2Q4G0Z9 681 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 TREML2Q5T2D2 321 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 TTC22Q5TAA0 569 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 CTU1Q7Z7A3 348 aaKnown RBP16.56■□□□□ 0.24
UPF1-205ENST00000598209 PARK7Q99497 189 aaKnown RBP16.56■□□□□ 0.24
UPF1-205ENST00000598209 SLC45A1Q9Y2W3 748 aa16.56■□□□□ 0.24
UPF1-205ENST00000598209 ROBO3Q96MS0 1386 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 ADGRA2Q96PE1 1338 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 ZSWIM8A7E2V4 1837 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 C19orf81C9J6K1 198 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 FOXP2O15409 715 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 CYP2C8P10632 490 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 AKR1B1P15121 316 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 SEPT2Q15019 361 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 TMEM179Q6ZVK1 233 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 STK11IPQ8N1F8 1099 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 ERO1AQ96HE7 468 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 CCDC17Q96LX7 622 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 MCOLN1Q9GZU1 580 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 NAPBQ9H115 298 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 TMOD4Q9NZQ9 345 aa16.55■□□□□ 0.24
UPF1-205ENST00000598209 GREB1LQ9C091 1923 aaPredicted RBP16.55■□□□□ 0.24
UPF1-205ENST00000598209 MGAMO43451 1857 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 NEFLP07196 543 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 CENPBP07199 599 aaPredicted RBP16.54■□□□□ 0.24
UPF1-205ENST00000598209 GSPT1P15170 499 aaKnown RBP16.54■□□□□ 0.24
UPF1-205ENST00000598209 VPS53Q5VIR6 699 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 USP17L2Q6R6M4 530 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 CENPQQ7L2Z9 268 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms