RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 SPDYE5A6NIY4 337 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 ZNF213O14771 459 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 GDF11O95390 407 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 HAND2P61296 217 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 CTDSPL2Q05D32 466 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 IMMTQ16891 758 aaKnown RBP17.06■□□□□ 0.32
VRK3-213ENST00000597215 ABCB5Q2M3G0 1257 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 MAP4K1Q92918 833 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 WNK4Q96J92 1243 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 CCDC17Q96LX7 622 aa17.06■□□□□ 0.32
VRK3-213ENST00000597215 ZBTB48P10074 688 aaPredicted RBP17.05■□□□□ 0.32
VRK3-213ENST00000597215 GRM1Q13255 1194 aa17.05■□□□□ 0.32
VRK3-213ENST00000597215 OPTNQ96CV9 577 aa17.05■□□□□ 0.32
VRK3-213ENST00000597215 OTUD5Q96G74 571 aa17.05■□□□□ 0.32
VRK3-213ENST00000597215 CABP5Q9NP86 173 aa17.05■□□□□ 0.32
VRK3-213ENST00000597215 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
VRK3-213ENST00000597215 RBM8AQ9Y5S9 174 aaKnown RBP17.05■□□□□ 0.32
VRK3-213ENST00000597215 WDR33Q9C0J8 1336 aaKnown RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 FAM155AB1AL88 458 aaPredicted RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 MPHOSPH10O00566 681 aaKnown RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 REC8O95072 547 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 GH2P01242 217 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 PCP11498 1178 aaKnown RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 PTPRAP18433 802 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 RASA1P20936 1047 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 VEGFBP49765 207 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 PPATQ06203 517 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 NOGQ13253 232 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 PPIL2Q13356 520 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 SPRYD7Q5W111 196 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 ZNF444Q8N0Y2 327 aaPredicted RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 TBC1D2Q9BYX2 928 aa17.04■□□□□ 0.32
VRK3-213ENST00000597215 RNF41Q9H4P4 317 aaPredicted RBP17.04■□□□□ 0.32
VRK3-213ENST00000597215 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.04■□□□□ 0.32
VRK3-213ENST00000597215 PHIPQ8WWQ0 1821 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 USP17L5A8MUK1 530 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 SHROOM1Q2M3G4 852 aaPredicted RBP17.03■□□□□ 0.32
VRK3-213ENST00000597215 AKNAD1Q5T1N1 836 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 TMEM179Q6ZVK1 233 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 TBC1D10CQ8IV04 446 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 STAG1Q8WVM7 1258 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 CNKSR2Q8WXI2 1034 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 NBPF3Q9H094 633 aa17.03■□□□□ 0.32
VRK3-213ENST00000597215 ORC4O43929 436 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 EIF5BO60841 1220 aaKnown RBP17.02■□□□□ 0.32
VRK3-213ENST00000597215 PRDM1O75626 825 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 FGRP09769 529 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 AKR1B1P15121 316 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 GJA5P36382 358 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 JAG1P78504 1218 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 MKRN3Q13064 507 aaKnown RBP17.02■□□□□ 0.32
VRK3-213ENST00000597215 MFSD6Q6ZSS7 791 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 AS3MTQ9HBK9 375 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 TOMM22Q9NS69 142 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.02■□□□□ 0.32
VRK3-213ENST00000597215 ZHX2Q9Y6X8 837 aa17.02■□□□□ 0.32
VRK3-213ENST00000597215 THSD7BQ9C0I4 1608 aa17.02■□□□□ 0.31
VRK3-213ENST00000597215 CYP21A2P08686 494 aa17.01■□□□□ 0.31
VRK3-213ENST00000597215 NT5C2P49902 561 aa17.01■□□□□ 0.31
VRK3-213ENST00000597215 RAB3GAP1Q15042 981 aa17.01■□□□□ 0.31
VRK3-213ENST00000597215 TACC3Q9Y6A5 838 aa17.01■□□□□ 0.31
VRK3-213ENST00000597215 GREB1LQ9C091 1923 aaPredicted RBP17.01■□□□□ 0.31
VRK3-213ENST00000597215 PLIN4Q96Q06 1357 aa17.01■□□□□ 0.31
VRK3-213ENST00000597215 TSPY2A6NKD2 308 aa17■□□□□ 0.31
VRK3-213ENST00000597215 CXCL11O14625 94 aa17■□□□□ 0.31
VRK3-213ENST00000597215 IRF6O14896 467 aa17■□□□□ 0.31
VRK3-213ENST00000597215 EPB41L2O43491 1005 aaKnown RBP17■□□□□ 0.31
VRK3-213ENST00000597215 RANBP6O60518 1105 aaKnown RBP17■□□□□ 0.31
VRK3-213ENST00000597215 AOC2O75106 756 aa17■□□□□ 0.31
VRK3-213ENST00000597215 TSPY3P0CV98 308 aa17■□□□□ 0.31
VRK3-213ENST00000597215 TSPY8P0CW00 308 aa17■□□□□ 0.31
VRK3-213ENST00000597215 GUCY1A2P33402 732 aa17■□□□□ 0.31
VRK3-213ENST00000597215 MAP2K2P36507 400 aa17■□□□□ 0.31
VRK3-213ENST00000597215 GTF2A2P52657 109 aa17■□□□□ 0.31
VRK3-213ENST00000597215 SEPT2Q15019 361 aa17■□□□□ 0.31
VRK3-213ENST00000597215 RRP12Q5JTH9 1297 aaKnown RBP17■□□□□ 0.31
VRK3-213ENST00000597215 CCDC84Q86UT8 332 aaPredicted RBP17■□□□□ 0.31
VRK3-213ENST00000597215 DNAJC5GQ8N7S2 189 aa17■□□□□ 0.31
VRK3-213ENST00000597215 WDR18Q9BV38 432 aa17■□□□□ 0.31
VRK3-213ENST00000597215 CNNM2Q9H8M5 875 aa17■□□□□ 0.31
VRK3-213ENST00000597215 INCENPQ9NQS7 918 aa17■□□□□ 0.31
VRK3-213ENST00000597215 KCNH4Q9UQ05 1017 aa17■□□□□ 0.31
VRK3-213ENST00000597215 AFG3L2Q9Y4W6 797 aa17■□□□□ 0.31
VRK3-213ENST00000597215 CEP350Q5VT06 3117 aa17■□□□□ 0.31
VRK3-213ENST00000597215 NEDD4P46934 1319 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 MANSC4A6NHS7 340 aaPredicted RBP16.99■□□□□ 0.31
VRK3-213ENST00000597215 TFAP4Q01664 338 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 ICA1Q05084 483 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 SNAPC2Q13487 334 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 NECTIN1Q15223 517 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 RNF20Q5VTR2 975 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 REM2Q8IYK8 340 aaPredicted RBP16.99■□□□□ 0.31
VRK3-213ENST00000597215 ZNF280CQ8ND82 737 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 PTPRFP10586 1907 aa16.99■□□□□ 0.31
VRK3-213ENST00000597215 TRIM75PA6NK02 468 aa16.98■□□□□ 0.31
VRK3-213ENST00000597215 SLC27A2O14975 620 aa16.98■□□□□ 0.31
VRK3-213ENST00000597215 KIF23Q02241 960 aaPredicted RBP16.98■□□□□ 0.31
VRK3-213ENST00000597215 SREBF2Q12772 1141 aa16.98■□□□□ 0.31
VRK3-213ENST00000597215 TRDNQ13061 729 aa16.98■□□□□ 0.31
VRK3-213ENST00000597215 SPP2Q13103 211 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms