RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 PRDM5Q9NQX1 630 aaPredicted RBP19.26■□□□□ 0.67
LIG1-214ENST00000597146 RASGRF1Q13972 1273 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 PLEKHH3Q7Z736 793 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 CCAR1Q8IX12 1150 aaKnown RBP19.25■□□□□ 0.67
LIG1-214ENST00000597146 BADQ92934 168 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 AS3MTQ9HBK9 375 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 TMOD4Q9NZQ9 345 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 DDX20Q9UHI6 824 aaKnown RBP19.25■□□□□ 0.67
LIG1-214ENST00000597146 NDUFB9Q9Y6M9 179 aa19.25■□□□□ 0.67
LIG1-214ENST00000597146 FOCADQ5VW36 1801 aa19.24■□□□□ 0.67
LIG1-214ENST00000597146 HOXA7P31268 230 aaPredicted RBP19.24■□□□□ 0.67
LIG1-214ENST00000597146 PLA2G5P39877 138 aa19.24■□□□□ 0.67
LIG1-214ENST00000597146 BACE1P56817 501 aa19.24■□□□□ 0.67
LIG1-214ENST00000597146 JAG1P78504 1218 aa19.24■□□□□ 0.67
LIG1-214ENST00000597146 SHROOM1Q2M3G4 852 aaPredicted RBP19.24■□□□□ 0.67
LIG1-214ENST00000597146 ZNF384Q8TF68 577 aa19.24■□□□□ 0.67
LIG1-214ENST00000597146 FAM163AQ96GL9 167 aaPredicted RBP19.24■□□□□ 0.67
LIG1-214ENST00000597146 TMEM265A0A087WTH1 108 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 GPR75-ASB3A0A0A6YYF3 556 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 DNM1LO00429 736 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 CNGA1P29973 690 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 MECOMQ03112 1051 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 MAP2K5Q13163 448 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 CCDC102BQ68D86 513 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 WDR63Q8IWG1 891 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 SLF2Q8IX21 1173 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 LPAR1Q92633 364 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 USP44Q9H0E7 712 aa19.23■□□□□ 0.67
LIG1-214ENST00000597146 GJC2Q5T442 439 aaPredicted RBP19.22■□□□□ 0.67
LIG1-214ENST00000597146 WDR18Q9BV38 432 aa19.22■□□□□ 0.67
LIG1-214ENST00000597146 CWC22Q9HCG8 908 aaKnown RBP19.22■□□□□ 0.67
LIG1-214ENST00000597146 CEP126Q9P2H0 1117 aa19.22■□□□□ 0.67
LIG1-214ENST00000597146 NPM3O75607 178 aaKnown RBP19.21■□□□□ 0.67
LIG1-214ENST00000597146 GRIN2CQ14957 1233 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 TRIM60Q495X7 471 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 MFSD14CQ5VZR4 134 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 SH3RF1Q7Z6J0 888 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 TRPV1Q8NER1 839 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 PDLIM7Q9NR12 457 aa19.21■□□□□ 0.67
LIG1-214ENST00000597146 CYP2C19P33261 490 aa19.2■□□□□ 0.66
LIG1-214ENST00000597146 NCBP3Q53F19 620 aaKnown RBP19.2■□□□□ 0.66
LIG1-214ENST00000597146 WDR78Q5VTH9 848 aa19.2■□□□□ 0.66
LIG1-214ENST00000597146 EDC3Q96F86 508 aaKnown RBP19.2■□□□□ 0.66
LIG1-214ENST00000597146 PDS5AQ29RF7 1337 aaKnown RBP19.2■□□□□ 0.66
LIG1-214ENST00000597146 TRIM43BA6NCK2 446 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 MSCO60682 206 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 CNMDO75829 334 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 CIAO1O76071 339 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 ANO1Q5XXA6 986 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 SLC39A5Q6ZMH5 540 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 TRIM43Q96BQ3 446 aaPredicted RBP19.19■□□□□ 0.66
LIG1-214ENST00000597146 FAM122AQ96E09 287 aa19.19■□□□□ 0.66
LIG1-214ENST00000597146 HERC5Q9UII4 1024 aaKnown RBP19.19■□□□□ 0.66
LIG1-214ENST00000597146 MYO9BQ13459 2157 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 GDF11O95390 407 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 SPTY2D1Q68D10 685 aaPredicted RBP19.18■□□□□ 0.66
LIG1-214ENST00000597146 ERICH6Q7L0X2 663 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 NPLOC4Q8TAT6 608 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 RNPC3Q96LT9 517 aaKnown RBP19.18■□□□□ 0.66
LIG1-214ENST00000597146 DNAJC18Q9H819 358 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 ZNF236Q9UL36 1845 aa19.18■□□□□ 0.66
LIG1-214ENST00000597146 CHD9Q3L8U1 2897 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 USP17L10C9JJH3 530 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 ASNSP08243 561 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 ITGB8P26012 769 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 EPHB4P54760 987 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 PA2G4Q9UQ80 394 aaKnown RBP19.17■□□□□ 0.66
LIG1-214ENST00000597146 PLXNA1Q9UIW2 1896 aa19.17■□□□□ 0.66
LIG1-214ENST00000597146 C19orf81C9J6K1 198 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 ZBTB22O15209 634 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 MYCNP04198 464 aaPredicted RBP19.16■□□□□ 0.66
LIG1-214ENST00000597146 CYBAP13498 195 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 ATP2B2Q01814 1243 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 SNX17Q15036 470 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 PI16Q6UXB8 463 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 TEX11Q8IYF3 940 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 MRPL50Q8N5N7 158 aaKnown RBP19.16■□□□□ 0.66
LIG1-214ENST00000597146 GTF3C2Q8WUA4 911 aaPredicted RBP19.16■□□□□ 0.66
LIG1-214ENST00000597146 EMILIN3Q9NT22 766 aa19.16■□□□□ 0.66
LIG1-214ENST00000597146 MYO5AQ9Y4I1 1855 aaKnown RBP19.16■□□□□ 0.66
LIG1-214ENST00000597146 SLC15A5A6NIM6 579 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 KBTBD13C9JR72 458 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 PTPREP23469 700 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 DNAJB2P25686 324 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 TIMM10P62072 90 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 TBC1D9Q6ZT07 1266 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 SH3RF3Q8TEJ3 882 aaPredicted RBP19.15■□□□□ 0.66
LIG1-214ENST00000597146 PPM1EQ8WY54 764 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 FERMT2Q96AC1 680 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 NSUN4Q96CB9 384 aaKnown RBP19.15■□□□□ 0.66
LIG1-214ENST00000597146 FBXO3Q9UK99 471 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 ZBTB21Q9ULJ3 1066 aa19.15■□□□□ 0.66
LIG1-214ENST00000597146 REV3LO60673 3130 aa19.14■□□□□ 0.66
LIG1-214ENST00000597146 TCF20Q9UGU0 1960 aaKnown RBP19.14■□□□□ 0.65
LIG1-214ENST00000597146 GLRX3O76003 335 aaKnown RBP19.14■□□□□ 0.65
LIG1-214ENST00000597146 IL15P40933 162 aaPredicted RBP19.14■□□□□ 0.65
LIG1-214ENST00000597146 GRB14Q14449 540 aa19.14■□□□□ 0.65
LIG1-214ENST00000597146 ZYXQ15942 572 aaKnown RBP19.14■□□□□ 0.65
LIG1-214ENST00000597146 ADAMTS19Q8TE59 1207 aa19.14■□□□□ 0.65
LIG1-214ENST00000597146 PI4KBQ9UBF8 816 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms