RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PLCG2P16885 1265 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 ATP5JP18859 108 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 GABPAQ06546 454 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 MTMR2Q13614 643 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 SLC9C1Q4G0N8 1177 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 HSP90AB4PQ58FF6 505 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 SLC9C2Q5TAH2 1124 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 TSHZ3Q63HK5 1081 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 CLASRPQ8N2M8 674 aaKnown RBP12.76□□□□□ -0.37
LIG1-213ENST00000596672 ANKRD13CQ8N6S4 541 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 ACER1Q8TDN7 264 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 ASCC2Q9H1I8 757 aaPredicted RBP12.76□□□□□ -0.37
LIG1-213ENST00000596672 TXNRD2Q9NNW7 524 aa12.76□□□□□ -0.37
LIG1-213ENST00000596672 FMNL1O95466 1100 aaPredicted RBP12.75□□□□□ -0.37
LIG1-213ENST00000596672 GH2P01242 217 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 BACE1P56817 501 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 MAP3K12Q12852 859 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 RLFQ13129 1914 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 PROCA1Q8NCQ7 364 aaPredicted RBP12.75□□□□□ -0.37
LIG1-213ENST00000596672 SLC44A5Q8NCS7 719 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 OTUD7AQ8TE49 926 aaPredicted RBP12.75□□□□□ -0.37
LIG1-213ENST00000596672 SDR42E1Q8WUS8 393 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 P2RX7Q99572 595 aaKnown RBP12.75□□□□□ -0.37
LIG1-213ENST00000596672 HAUS7Q99871 368 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 NOL10Q9BSC4 688 aaKnown RBP12.75□□□□□ -0.37
LIG1-213ENST00000596672 DCTPP1Q9H773 170 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 ARMT1Q9H993 441 aa12.75□□□□□ -0.37
LIG1-213ENST00000596672 MYPNQ86TC9 1320 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 CYP2D7A0A087X1C5 515 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 IGSF3O75054 1194 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 HMMRO75330 724 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 IFIT2P09913 472 aaKnown RBP12.74□□□□□ -0.37
LIG1-213ENST00000596672 ELNP15502 786 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 ADD2P35612 726 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 FLT3LGP49771 235 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 Q3C1V9 767 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 KIAA1755Q5JYT7 1200 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 SIAH1Q8IUQ4 282 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 DCP1AQ9NPI6 582 aaPredicted RBP12.74□□□□□ -0.37
LIG1-213ENST00000596672 PAG1Q9NWQ8 432 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 GJD2Q9UKL4 321 aa12.74□□□□□ -0.37
LIG1-213ENST00000596672 MAGEB6P1A0A0J9YX57 407 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 GNRH1P01148 92 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 ASNSP08243 561 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 USP5P45974 858 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 KIF22Q14807 665 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 UBE2Q1Q7Z7E8 422 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 DYNLL2Q96FJ2 89 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 EHD4Q9H223 541 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 RBPJLQ9UBG7 517 aa12.73□□□□□ -0.37
LIG1-213ENST00000596672 A0A1W2PRG0 241 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 CNMDO75829 334 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 HOXA7P31268 230 aaPredicted RBP12.72□□□□□ -0.37
LIG1-213ENST00000596672 GRK4P32298 578 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 FCGRTP55899 365 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 TRIM32Q13049 653 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 CLEC10AQ8IUN9 316 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 CRACR2BQ8N4Y2 399 aaPredicted RBP12.72□□□□□ -0.37
LIG1-213ENST00000596672 LRRCC1Q9C099 1032 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 PUS7LQ9H0K6 701 aaKnown RBP12.72□□□□□ -0.37
LIG1-213ENST00000596672 UNC93B1Q9H1C4 597 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 MORF4L1Q9UBU8 362 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 SERPINB13Q9UIV8 391 aa12.72□□□□□ -0.37
LIG1-213ENST00000596672 SZT2Q5T011 3432 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 MBD4O95243 580 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 CENPBP07199 599 aaPredicted RBP12.71□□□□□ -0.37
LIG1-213ENST00000596672 CCL5P13501 91 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 PRMT2P55345 433 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 SEPT2Q15019 361 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 ARHGEF6Q15052 776 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 TTF1Q15361 905 aaPredicted RBP12.71□□□□□ -0.37
LIG1-213ENST00000596672 FAM110CQ1W6H9 321 aa12.71□□□□□ -0.37
LIG1-213ENST00000596672 SMCR8Q8TEV9 937 aaPredicted RBP12.71□□□□□ -0.37
LIG1-213ENST00000596672 MYH8P13535 1937 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 ALPK3Q96L96 1907 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 USP17L10C9JJH3 530 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 ADCY3O60266 1144 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 HLA-DOAP06340 250 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 HERVK_113P62684 666 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 ZYXQ15942 572 aaKnown RBP12.7□□□□□ -0.38
LIG1-213ENST00000596672 PRPF38BQ5VTL8 546 aaKnown RBP12.7□□□□□ -0.38
LIG1-213ENST00000596672 RAET1EQ8TD07 263 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 TBC1D2Q9BYX2 928 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 PORCNQ9H237 461 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 MCM9Q9NXL9 1143 aa12.7□□□□□ -0.38
LIG1-213ENST00000596672 C19orf81C9J6K1 198 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 TNPO2O14787 897 aaKnown RBP12.69□□□□□ -0.38
LIG1-213ENST00000596672 RRP1P56182 461 aaKnown RBP12.69□□□□□ -0.38
LIG1-213ENST00000596672 IRF5Q13568 498 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 ABCB5Q2M3G0 1257 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 CERKLQ49MI3 558 aaPredicted RBP12.69□□□□□ -0.38
LIG1-213ENST00000596672 NBPF11Q86T75 865 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 TTC6Q86TZ1 520 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 OSBP2Q969R2 916 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 C12orf42Q96LP6 360 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 CRBNQ96SW2 442 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG1-213ENST00000596672 TMEM106CQ9BVX2 250 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 CRNKL1Q9BZJ0 848 aaKnown RBP12.69□□□□□ -0.38
LIG1-213ENST00000596672 AS3MTQ9HBK9 375 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms