RNA–Protein interactions for RNA: ENST00000596365.5

LINC00649-208, long intergenic non-protein coding RNA 649, human

TSL 5

Gene LINC00649, Length 682 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00649-208	ENST00000596365	CTNND1	O60716	968 aa	Known RBP	10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	XRCC5	P13010	732 aa	Known RBP	10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	NFIA	Q12857	509 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	SHH	Q15465	462 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	EPHA10	Q5JZY3	1008 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	TREML2	Q5T2D2	321 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	TTYH1	Q9H313	450 aa	Predicted RBP	10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	FAM198A	Q9UFP1	575 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	ATAD5	Q96QE3	1844 aa		10.69	□□□□□ -0.7
LINC00649-208	ENST00000596365	MYH2	Q9UKX2	1941 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	ATRNL1	Q5VV63	1379 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	CYP2B6	P20813	491 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	CACNB2	Q08289	660 aa	Predicted RBP	10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	WDR66	Q8TBY9	1149 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	NUDT12	Q9BQG2	462 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	PUS3	Q9BZE2	481 aa	Known RBP	10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	USP40	Q9NVE5	1235 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	DAGLA	Q9Y4D2	1042 aa		10.68	□□□□□ -0.7
LINC00649-208	ENST00000596365	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	RLF	Q13129	1914 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	APAF1	O14727	1248 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	ENTPD3	O75355	529 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	ZKSCAN1	P17029	563 aa	Predicted RBP	10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	ZEB1	P37275	1124 aa	Predicted RBP	10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	MAP3K10	Q02779	954 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	MAP3K12	Q12852	859 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	CAMK2B	Q13554	666 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	TWISTNB	Q3B726	338 aa	Predicted RBP	10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	ZFPM1	Q8IX07	1006 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	SOCS4	Q8WXH5	440 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	MORF4L1	Q9UBU8	362 aa		10.67	□□□□□ -0.7
LINC00649-208	ENST00000596365	GRM8	O00222	908 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	CCND3	P30281	292 aa	Predicted RBP	10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	PDE3A	Q14432	1141 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	DIXDC1	Q155Q3	683 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	METTL24	Q5JXM2	366 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	C9orf50	Q5SZB4	431 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	BEND3	Q5T5X7	828 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	TSHZ2	Q9NRE2	1034 aa		10.66	□□□□□ -0.7
LINC00649-208	ENST00000596365	KIF16B	Q96L93	1317 aa		10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	PDE8B	O95263	885 aa		10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	RGS3	P49796	1198 aa		10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	ATXN2L	Q8WWM7	1075 aa	Known RBP	10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	TSR2	Q969E8	191 aa	Known RBP	10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	IDI2	Q9BXS1	227 aa		10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	TBC1D2	Q9BYX2	928 aa		10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.65	□□□□□ -0.7
LINC00649-208	ENST00000596365	LDHB	P07195	334 aa	Known RBP	10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	IFIT1	P09914	478 aa	Known RBP	10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	RGS2	P41220	211 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	RTP1	P59025	263 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	SPP2	Q13103	211 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	CCDC84	Q86UT8	332 aa	Predicted RBP	10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	VGLL2	Q8N8G2	317 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	USP38	Q8NB14	1042 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	MYO9B	Q13459	2157 aa		10.64	□□□□□ -0.71
LINC00649-208	ENST00000596365	SYNGAP1	Q96PV0	1343 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365		F6X3S4	739 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	MSC	O60682	206 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	MAPK4	P31152	587 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	HMGCS2	P54868	508 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	IRX3	P78415	501 aa	Predicted RBP	10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	LRRC24	Q50LG9	513 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	SH3BP5L	Q7L8J4	393 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	SPNS2	Q8IVW8	549 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	CCAR1	Q8IX12	1150 aa	Known RBP	10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	ZNF280C	Q8ND82	737 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	GPRC5A	Q8NFJ5	357 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	ADAMTS19	Q8TE59	1207 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	USP6NL	Q92738	828 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	BAD	Q92934	168 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	APBA2	Q99767	749 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	ATP11B	Q9Y2G3	1177 aa		10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.63	□□□□□ -0.71
LINC00649-208	ENST00000596365	DDTL	A6NHG4	134 aa	Predicted RBP	10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	DNM1L	O00429	736 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	PRDX5	P30044	214 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	GRIN2C	Q14957	1233 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	PUM3	Q15397	648 aa	Known RBP	10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	CCL14	Q16627	93 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	SH3D19	Q5HYK7	790 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	MFSD14C	Q5VZR4	134 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	IL27	Q8NEV9	243 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	LPAR1	Q92633	364 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	ASB2	Q96Q27	587 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	UHRF1	Q96T88	793 aa	Predicted RBP	10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	C1QTNF1	Q9BXJ1	281 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	OSBPL5	Q9H0X9	879 aa	Predicted RBP	10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	WDR70	Q9NW82	654 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	THEG	Q9P2T0	379 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	PIEZO1	Q92508	2521 aa		10.62	□□□□□ -0.71
LINC00649-208	ENST00000596365	ALDH1L1	O75891	902 aa		10.61	□□□□□ -0.71
LINC00649-208	ENST00000596365	FGFR2	P21802	821 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms