RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 PFKFB2O60825 505 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 DDIT3P35638 169 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 HIRAP54198 1017 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 TFAP4Q01664 338 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 TMEM67Q5HYA8 995 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 FAM47AQ5JRC9 791 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 NEDD1Q8NHV4 660 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 HACL1Q9UJ83 578 aa17.33■□□□□ 0.36
SHKBP1-211ENST00000595945 GLTPD2A6NH11 291 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 LMOD1P29536 600 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 PDIA3P30101 505 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 TNNI2P48788 182 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 TNFAIP1Q13829 316 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 WTAPQ15007 396 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 SART3Q15020 963 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 DPY19L2Q6NUT2 758 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 IQCA1Q86XH1 822 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ZNF444Q8N0Y2 327 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ENAHQ8N8S7 591 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ANKS1AQ92625 1134 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 GTF3C6Q969F1 213 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 TEPSINQ96N21 525 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ZKSCAN3Q9BRR0 538 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 UBAC1Q9BSL1 405 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ADARB2Q9NS39 739 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 ATAD5Q96QE3 1844 aa17.32■□□□□ 0.36
SHKBP1-211ENST00000595945 NID2Q14112 1375 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 KLF18A0A0U1RQI7 1052 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 TSPY2A6NKD2 308 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 TBC1D12O60347 775 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 SLURP2P0DP57 97 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 NOVP48745 357 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 MAP3K10Q02779 954 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 CCDC178Q5BJE1 867 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 RCSD1Q6JBY9 416 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 TATDN1Q6P1N9 297 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 ZSCAN29Q8IWY8 852 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 TMTC2Q8N394 836 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 CSRNP1Q96S65 589 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 TMEM39BQ9GZU3 492 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 IL17RBQ9NRM6 502 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 HERC5Q9UII4 1024 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 HPS5Q9UPZ3 1129 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 MYH6P13533 1939 aa17.31■□□□□ 0.36
SHKBP1-211ENST00000595945 IGKV6D-41A0A0C4DH26 115 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 ERICH2A1L162 156 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 NMT2O60551 498 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 TSPY3P0CV98 308 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 TSPY8P0CW00 308 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 RASA3Q14644 834 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 APOA5Q6Q788 366 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 APOBEC3FQ8IUX4 373 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 CCDC83Q8IWF9 413 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 CDAN1Q8IWY9 1227 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 NECAB1Q8N987 351 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 SPRYD3Q8NCJ5 442 aa17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 SLKQ9H2G2 1235 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-211ENST00000595945 PITPNM2Q9BZ72 1349 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 AKR1B1P15121 316 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 RCAN1P53805 252 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 SCRN1Q12765 414 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 ANGEL2Q5VTE6 544 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 DGKHQ86XP1 1220 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 CRACR2BQ8N4Y2 399 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 CCDC17Q96LX7 622 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 FOXD4L1Q9NU39 408 aa17.29■□□□□ 0.36
SHKBP1-211ENST00000595945 FAM196BA6NMK8 535 aa17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 GOLGA8BA8MQT2 603 aa17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 HSP90AA1P07900 732 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 STK3Q13188 491 aa17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 CWC22Q9HCG8 908 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 GGA3Q9NZ52 723 aa17.28■□□□□ 0.36
SHKBP1-211ENST00000595945 CCDC69A6NI79 296 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 POTECB2RU33 542 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 RRP1BQ14684 758 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 IFIT1BQ5T764 474 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 NFXL1Q6ZNB6 911 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 ZNF654Q8IZM8 581 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 DEFB129Q9H1M3 183 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 PPP2R3BQ9Y5P8 575 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 SLC12A7Q9Y666 1083 aa17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 BAZ2BQ9UIF8 2168 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-211ENST00000595945 ZBTB43O43298 467 aa17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 CTDNEP1O95476 244 aa17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 USP50Q70EL3 339 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 TRIM34Q9BYJ4 488 aa17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 SCAF8Q9UPN6 1271 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 UTRNP46939 3433 aa17.26■□□□□ 0.35
SHKBP1-211ENST00000595945 DOCK1Q14185 1865 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 DDAH1O94760 285 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 EPHX2P34913 555 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 CCT2P78371 535 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 CERKLQ49MI3 558 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 RAB11FIP4Q86YS3 637 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 NSUN7Q8NE18 718 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 SMARCC2Q8TAQ2 1214 aa17.25■□□□□ 0.35
SHKBP1-211ENST00000595945 CHMP4CQ96CF2 233 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms