RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MYH8P13535 1937 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 MBD4O95243 580 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 CHGBP05060 677 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 ZSCAN25Q6NSZ9 544 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 SLC17A8Q8NDX2 589 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 OTUD7AQ8TE49 926 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-205ENST00000595028 PARK7Q99497 189 aaKnown RBP18.24■□□□□ 0.51
TRIM28-205ENST00000595028 ARMT1Q9H993 441 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 SERPINB13Q9UIV8 391 aa18.24■□□□□ 0.51
TRIM28-205ENST00000595028 ASNSP08243 561 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 CAP1Q01518 475 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 GADL1Q6ZQY3 521 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 TTC6Q86TZ1 520 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 KBTBD3Q8NAB2 608 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 ZNF280CQ8ND82 737 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 SDR42E1Q8WUS8 393 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 ZNF333Q96JL9 665 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 GINM1Q9NU53 330 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 ZBTB21Q9ULJ3 1066 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 SALL3Q9BXA9 1300 aa18.23■□□□□ 0.51
TRIM28-205ENST00000595028 USP17L5A8MUK1 530 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 GDF11O95390 407 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 MX1P20591 662 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 JAG1P78504 1218 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 SHROOM1Q2M3G4 852 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-205ENST00000595028 CHRDL2Q6WN34 429 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 PI4K2BQ8TCG2 481 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 AS3MTQ9HBK9 375 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 DCP1AQ9NPI6 582 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-205ENST00000595028 SLC45A1Q9Y2W3 748 aa18.22■□□□□ 0.51
TRIM28-205ENST00000595028 ERC2O15083 957 aa18.21■□□□□ 0.51
TRIM28-205ENST00000595028 PLCD1P51178 756 aa18.21■□□□□ 0.51
TRIM28-205ENST00000595028 SPP2Q13103 211 aa18.21■□□□□ 0.51
TRIM28-205ENST00000595028 EXOC6Q8TAG9 804 aa18.21■□□□□ 0.51
TRIM28-205ENST00000595028 MCM9Q9NXL9 1143 aa18.21■□□□□ 0.51
TRIM28-205ENST00000595028 ZBTB47Q9UFB7 747 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-205ENST00000595028 PRKAB2O43741 272 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 GLRX3O76003 335 aaKnown RBP18.2■□□□□ 0.5
TRIM28-205ENST00000595028 POLR3DP05423 398 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-205ENST00000595028 CYP2C8P10632 490 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 ANKRD45Q5TZF3 282 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 TATDN1Q6P1N9 297 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 C17orf99Q6UX52 265 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 PROCA1Q8NCQ7 364 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-205ENST00000595028 WDR18Q9BV38 432 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 PUS7LQ9H0K6 701 aaKnown RBP18.2■□□□□ 0.5
TRIM28-205ENST00000595028 CPA4Q9UI42 421 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 AGTPBP1Q9UPW5 1226 aa18.2■□□□□ 0.5
TRIM28-205ENST00000595028 MGAMO43451 1857 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 SHMT1P34896 483 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 HMGCS2P54868 508 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 LACTBP83111 547 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-205ENST00000595028 GABPAQ06546 454 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 TREML2Q5T2D2 321 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 ATP8A2Q9NTI2 1148 aa18.19■□□□□ 0.5
TRIM28-205ENST00000595028 SUPT16HQ9Y5B9 1047 aaKnown RBP18.19■□□□□ 0.5
TRIM28-205ENST00000595028 GH2P01242 217 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 BCRP11274 1271 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 EVX2Q03828 476 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 MTMR2Q13614 643 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 SH3D19Q5HYK7 790 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 SMC5Q8IY18 1101 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 APPBP2Q92624 585 aa18.18■□□□□ 0.5
TRIM28-205ENST00000595028 RBM27Q9P2N5 1060 aaKnown RBP18.18■□□□□ 0.5
TRIM28-205ENST00000595028 RNF113AO15541 343 aaKnown RBP18.17■□□□□ 0.5
TRIM28-205ENST00000595028 ZFYP08048 801 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-205ENST00000595028 CYP2D6P10635 497 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 BACE1P56817 501 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 KIF22Q14807 665 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 ARHGEF6Q15052 776 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 SLC9C1Q4G0N8 1177 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 NBPF11Q86T75 865 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 ARHGAP39Q9C0H5 1083 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 RWDD1Q9H446 243 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-205ENST00000595028 PTCH2Q9Y6C5 1203 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 SLC4A4Q9Y6R1 1079 aa18.17■□□□□ 0.5
TRIM28-205ENST00000595028 LAMA3Q16787 3333 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 MYCP01106 439 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-205ENST00000595028 ABCB5Q2M3G0 1257 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 LRRFIP1Q32MZ4 808 aaKnown RBP18.16■□□□□ 0.5
TRIM28-205ENST00000595028 CERKLQ49MI3 558 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-205ENST00000595028 SMCR8Q8TEV9 937 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-205ENST00000595028 OSBP2Q969R2 916 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 DDRGK1Q96HY6 314 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 PNMA3Q9UL41 463 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 TAOK2Q9UL54 1235 aa18.16■□□□□ 0.5
TRIM28-205ENST00000595028 USP17L10C9JJH3 530 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 PABPC4Q13310 644 aaKnown RBP eCLIP18.15■□□□□ 0.5
TRIM28-205ENST00000595028 AMOTL1Q8IY63 956 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 SLC44A5Q8NCS7 719 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 STRBPQ96SI9 672 aaKnown RBP18.15■□□□□ 0.5
TRIM28-205ENST00000595028 FSD1Q9BTV5 496 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 TMOD4Q9NZQ9 345 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 STAP2Q9UGK3 403 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 SWAP70Q9UH65 585 aa18.15■□□□□ 0.5
TRIM28-205ENST00000595028 C19orf81C9J6K1 198 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 M0R2C6 588 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 GNRH1P01148 92 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 CTGFP29279 349 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 PDE1AP54750 535 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms