RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 SDF4Q9BRK5 362 aa22.75■■□□□ 1.23
CLIP3-206ENST00000593074 EP400Q96L91 3159 aa22.74■■□□□ 1.23
CLIP3-206ENST00000593074 MYH6P13533 1939 aa22.74■■□□□ 1.23
CLIP3-206ENST00000593074 MARCKSP29966 332 aaPredicted RBP22.74■■□□□ 1.23
CLIP3-206ENST00000593074 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.74■■□□□ 1.23
CLIP3-206ENST00000593074 CATIPQ7Z7H3 387 aa22.74■■□□□ 1.23
CLIP3-206ENST00000593074 CMTR1Q8N1G2 835 aaKnown RBP22.74■■□□□ 1.23
CLIP3-206ENST00000593074 FAM237AA0A1B0GTK4 181 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 BTBD18B2RXH4 712 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 DDAH1O94760 285 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 ZNF202O95125 648 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 CALM1P0DP23 149 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 CALM2P0DP24 149 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 CALM3P0DP25 149 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 EVX2Q03828 476 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 KIAA2012Q0VF49 1180 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 FUT2Q10981 343 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 TROAPQ12815 778 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 PLA2G4DQ86XP0 818 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 RBM28Q9NW13 759 aaKnown RBP22.73■■□□□ 1.23
CLIP3-206ENST00000593074 HPSEQ9Y251 543 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 SLC3A2P08195 630 aaKnown RBP22.73■■□□□ 1.23
CLIP3-206ENST00000593074 CCDC82Q8N4S0 544 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 TBC1D16Q8TBP0 767 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 KIAA1468Q9P260 1216 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 TAOK2Q9UL54 1235 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 KCNJ14Q9UNX9 436 aa22.73■■□□□ 1.23
CLIP3-206ENST00000593074 TPM3P06753 285 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 LDHCP07864 332 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 IL1R1P14778 569 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 SP8Q8IXZ3 490 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 MPNDQ8N594 471 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 TIGD1Q96MW7 591 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 POLLQ9UGP5 575 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 MKRN1Q9UHC7 482 aaKnown RBP22.72■■□□□ 1.23
CLIP3-206ENST00000593074 GOLGA6L6A8MZA4 724 aa22.72■■□□□ 1.23
CLIP3-206ENST00000593074 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.72■■□□□ 1.23
CLIP3-206ENST00000593074 TTC12Q9H892 705 aaPredicted RBP22.72■■□□□ 1.23
CLIP3-206ENST00000593074 PPEF1O14829 653 aaPredicted RBP22.71■■□□□ 1.23
CLIP3-206ENST00000593074 BAG3O95817 575 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 ZNF75DP51815 510 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 RESP18Q5W5W9 173 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 SHC4Q6S5L8 630 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 SARM1Q6SZW1 724 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 CEP57L1Q8IYX8 460 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 ROBO3Q96MS0 1386 aa22.71■■□□□ 1.23
CLIP3-206ENST00000593074 C6orf229H3BNL8 230 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 CUTAO60888 179 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 CYP2D6P10635 497 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 NT5C2P49902 561 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 TOB1P50616 345 aaPredicted RBP22.7■■□□□ 1.23
CLIP3-206ENST00000593074 PDE4BQ07343 736 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 RILPL1Q5EBL4 403 aa22.7■■□□□ 1.23
CLIP3-206ENST00000593074 ZNF830Q96NB3 372 aaPredicted RBP22.7■■□□□ 1.23
CLIP3-206ENST00000593074 NAP1L5Q96NT1 182 aaPredicted RBP22.7■■□□□ 1.23
CLIP3-206ENST00000593074 NOL10Q9BSC4 688 aaKnown RBP22.7■■□□□ 1.23
CLIP3-206ENST00000593074 GOLGA6L19H0YKK7 550 aa22.7■■□□□ 1.22
CLIP3-206ENST00000593074 PRPF3O43395 683 aaKnown RBP22.7■■□□□ 1.22
CLIP3-206ENST00000593074 PKN1Q16512 942 aa22.7■■□□□ 1.22
CLIP3-206ENST00000593074 DHX40Q8IX18 779 aaKnown RBP22.7■■□□□ 1.22
CLIP3-206ENST00000593074 ERCC4Q92889 916 aaPredicted RBP22.7■■□□□ 1.22
CLIP3-206ENST00000593074 LRRC37AA6NMS7 1700 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 PPP4CP60510 307 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 AKAP17AQ02040 695 aaKnown RBP22.69■■□□□ 1.22
CLIP3-206ENST00000593074 GRIK5Q16478 980 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 PIBF1Q8WXW3 757 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 SHISA4Q96DD7 197 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 TRIM5Q9C035 493 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 MCM9Q9NXL9 1143 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 NAV1Q8NEY1 1877 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 PLEKHA8P1O95397 391 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 SYKP43405 635 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 USP5P45974 858 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 DIXDC1Q155Q3 683 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 TMTC3Q6ZXV5 915 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 SPC24Q8NBT2 197 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 NAT10Q9H0A0 1025 aaKnown RBP22.69■■□□□ 1.22
CLIP3-206ENST00000593074 ATP6V0A2Q9Y487 856 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 PARP3Q9Y6F1 533 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 LTBP1Q14766 1721 aa22.69■■□□□ 1.22
CLIP3-206ENST00000593074 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.68■■□□□ 1.22
CLIP3-206ENST00000593074 SRGNP10124 158 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 NPR1P16066 1061 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 XBP1P17861 261 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 CDC25BP30305 580 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 NR5A1Q13285 461 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 C12orf60Q5U649 245 aa22.68■■□□□ 1.22
CLIP3-206ENST00000593074 A0A087WWV3 80 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 PDE6BP35913 854 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 FAM47AQ5JRC9 791 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 KRI1Q8N9T8 703 aaKnown RBP22.67■■□□□ 1.22
CLIP3-206ENST00000593074 SH3RF3Q8TEJ3 882 aaPredicted RBP22.67■■□□□ 1.22
CLIP3-206ENST00000593074 BPIFA3Q9BQP9 254 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 PHF20Q9BVI0 1012 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 KCNF1Q9H3M0 494 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 CNTNAP5Q8WYK1 1306 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 NMT2O60551 498 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 MMP10P09238 476 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 USP17L8P0C7I0 530 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 OXER1Q8TDS5 423 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms