RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 IRX3P78415 501 aaPredicted RBP13.23□□□□□ -0.29
LIG3-214ENST00000592244 MTMR2Q13614 643 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 SLC4A8Q2Y0W8 1093 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 TATDN1Q6P1N9 297 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 RAET1EQ8TD07 263 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 GTF3C2Q8WUA4 911 aaPredicted RBP13.23□□□□□ -0.29
LIG3-214ENST00000592244 ARMC5Q96C12 935 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 EDC3Q96F86 508 aaKnown RBP13.23□□□□□ -0.29
LIG3-214ENST00000592244 FEZ1Q99689 392 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 SWAP70Q9UH65 585 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 ADGRA2Q96PE1 1338 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 GLRX3O76003 335 aaKnown RBP13.22□□□□□ -0.29
LIG3-214ENST00000592244 MBD4O95243 580 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 GH2P01242 217 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 BCRP11274 1271 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 USP14P54578 494 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 ABCB5Q2M3G0 1257 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 USP17L2Q6R6M4 530 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 CCDC84Q86UT8 332 aaPredicted RBP13.22□□□□□ -0.29
LIG3-214ENST00000592244 GCC1Q96CN9 775 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 DNAJC18Q9H819 358 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 DCP1AQ9NPI6 582 aaPredicted RBP13.22□□□□□ -0.29
LIG3-214ENST00000592244 SRRDQ9UH36 339 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 PCDHB15Q9Y5E8 787 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 PTCH2Q9Y6C5 1203 aa13.22□□□□□ -0.29
LIG3-214ENST00000592244 RRP1BQ14684 758 aaKnown RBP13.21□□□□□ -0.29
LIG3-214ENST00000592244 RAB3GAP1Q15042 981 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 FAM110CQ1W6H9 321 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 LCORLQ8N3X6 602 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 KBTBD3Q8NAB2 608 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 SDR42E1Q8WUS8 393 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 COA7Q96BR5 231 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 TRIM47Q96LD4 638 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 CRBNQ96SW2 442 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 ARMT1Q9H993 441 aa13.21□□□□□ -0.29
LIG3-214ENST00000592244 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.21□□□□□ -0.29
LIG3-214ENST00000592244 DOCK1Q14185 1865 aa13.21□□□□□ -0.3
LIG3-214ENST00000592244 MYPNQ86TC9 1320 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 MPHOSPH10O00566 681 aaKnown RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 TNPO2O14787 897 aaKnown RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 GNAT2P19087 354 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 HOXA7P31268 230 aaPredicted RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 PLCD1P51178 756 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 HDAC1Q13547 482 aaPredicted RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 TREML2Q5T2D2 321 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 CCAR1Q8IX12 1150 aaKnown RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 ANKRD13CQ8N6S4 541 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 ARHGAP39Q9C0H5 1083 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 ASCC2Q9H1I8 757 aaPredicted RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 BIN2Q9UBW5 565 aaPredicted RBP13.2□□□□□ -0.3
LIG3-214ENST00000592244 SLC4A4Q9Y6R1 1079 aa13.2□□□□□ -0.3
LIG3-214ENST00000592244 MX1P20591 662 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 UBXN2AP68543 259 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 ANKRD45Q5TZF3 282 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 GIMAP6Q6P9H5 292 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 TMEM179Q6ZVK1 233 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 SLAIN1Q8ND83 568 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 APPBP2Q92624 585 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 ZNF333Q96JL9 665 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 CCDC17Q96LX7 622 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 RWDD1Q9H446 243 aaPredicted RBP13.19□□□□□ -0.3
LIG3-214ENST00000592244 SH2D4AQ9H788 454 aa13.19□□□□□ -0.3
LIG3-214ENST00000592244 RNF113AO15541 343 aaKnown RBP13.18□□□□□ -0.3
LIG3-214ENST00000592244 ECM2O94769 699 aaPredicted RBP13.18□□□□□ -0.3
LIG3-214ENST00000592244 GRK4P32298 578 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 SHMT1P34896 483 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 GABPAQ06546 454 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 NACAP1Q9BZK3 213 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 KIAA1683Q9H0B3 1180 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 ZNF287Q9HBT7 754 aa13.18□□□□□ -0.3
LIG3-214ENST00000592244 ARPP21Q9UBL0 812 aaPredicted RBP13.18□□□□□ -0.3
LIG3-214ENST00000592244 USP17L15C9J2P7 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L13C9JLJ4 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L12C9JPN9 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L11C9JVI0 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L21D6R901 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L18D6R9N7 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L22D6RA61 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L17D6RBQ6 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L19D6RCP7 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L20D6RJB6 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 USP17L24Q0WX57 530 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 GPRC5AQ8NFJ5 357 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 NKX2-3Q8TAU0 364 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 C12orf42Q96LP6 360 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 FSD1Q9BTV5 496 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 ARHGEF10LQ9HCE6 1279 aa13.17□□□□□ -0.3
LIG3-214ENST00000592244 CWC22Q9HCG8 908 aaKnown RBP13.17□□□□□ -0.3
LIG3-214ENST00000592244 PRKAB2O43741 272 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 APPP05067 770 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 CAPN2P17655 700 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 HERVK_113P62684 666 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 CCNA1P78396 465 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 JAG1P78504 1218 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 CAP1Q01518 475 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 PRKCZQ05513 592 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 IRF5Q13568 498 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 ZYXQ15942 572 aaKnown RBP13.16□□□□□ -0.3
LIG3-214ENST00000592244 C12orf60Q5U649 245 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 TSHZ3Q63HK5 1081 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms