RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 POTEFA5A3E0 1075 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 SMC5Q8IY18 1101 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 KBTBD3Q8NAB2 608 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 SDR42E1Q8WUS8 393 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 WDR18Q9BV38 432 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 AGTPBP1Q9UPW5 1226 aa16.79■□□□□ 0.28
CLIP3-205ENST00000592017 SALL3Q9BXA9 1300 aa16.78■□□□□ 0.28
CLIP3-205ENST00000592017 GDF11O95390 407 aa16.78■□□□□ 0.28
CLIP3-205ENST00000592017 HMGCS2P54868 508 aa16.78■□□□□ 0.28
CLIP3-205ENST00000592017 UBE3CQ15386 1083 aa16.78■□□□□ 0.28
CLIP3-205ENST00000592017 ZNF333Q96JL9 665 aa16.78■□□□□ 0.28
CLIP3-205ENST00000592017 TNRC18O15417 2968 aaPredicted RBP16.78■□□□□ 0.28
CLIP3-205ENST00000592017 FMNL1O95466 1100 aaPredicted RBP16.77■□□□□ 0.28
CLIP3-205ENST00000592017 GNRH1P01148 92 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 ASNSP08243 561 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 OSBPP22059 807 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 SH3D19Q5HYK7 790 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 PROCA1Q8NCQ7 364 aaPredicted RBP16.77■□□□□ 0.28
CLIP3-205ENST00000592017 FSD1Q9BTV5 496 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 TBC1D2Q9BYX2 928 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 SRRDQ9UH36 339 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 ZBTB21Q9ULJ3 1066 aa16.77■□□□□ 0.28
CLIP3-205ENST00000592017 PRKAB2O43741 272 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 POLR3DP05423 398 aaPredicted RBP16.76■□□□□ 0.27
CLIP3-205ENST00000592017 PLCD1P51178 756 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 PDE1AP54750 535 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 PRMT2P55345 433 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 SLC9C1Q4G0N8 1177 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 TATDN1Q6P1N9 297 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 CHD1LQ86WJ1 897 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 SH3TC2Q8TF17 1288 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 PUS7LQ9H0K6 701 aaKnown RBP16.76■□□□□ 0.27
CLIP3-205ENST00000592017 MCM9Q9NXL9 1143 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 SERPINB13Q9UIV8 391 aa16.76■□□□□ 0.27
CLIP3-205ENST00000592017 BACE1P56817 501 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 NUCB1Q02818 461 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 EVX2Q03828 476 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 MTMR2Q13614 643 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 TTC6Q86TZ1 520 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 SMCR8Q8TEV9 937 aaPredicted RBP16.75■□□□□ 0.27
CLIP3-205ENST00000592017 EHD4Q9H223 541 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 AS3MTQ9HBK9 375 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 GINM1Q9NU53 330 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 SLC4A4Q9Y6R1 1079 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 FOCADQ5VW36 1801 aa16.75■□□□□ 0.27
CLIP3-205ENST00000592017 RNF113AO15541 343 aaKnown RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 MYCP01106 439 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 GH2P01242 217 aa16.74■□□□□ 0.27
CLIP3-205ENST00000592017 ZFYP08048 801 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 EN2P19622 333 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 FCGRTP55899 365 aa16.74■□□□□ 0.27
CLIP3-205ENST00000592017 LRRFIP1Q32MZ4 808 aaKnown RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 NBPF11Q86T75 865 aa16.74■□□□□ 0.27
CLIP3-205ENST00000592017 APPBP2Q92624 585 aa16.74■□□□□ 0.27
CLIP3-205ENST00000592017 ASCC2Q9H1I8 757 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 DCP1AQ9NPI6 582 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-205ENST00000592017 STAP2Q9UGK3 403 aa16.74■□□□□ 0.27
CLIP3-205ENST00000592017 DOCK1Q14185 1865 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 CDK5RAP2Q96SN8 1893 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 SIPA1L1O43166 1804 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 CYP2D6P10635 497 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 HOXD10P28358 340 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 SHMT1P34896 483 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 PRKCZQ05513 592 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 GABPAQ06546 454 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 ANKRD13CQ8N6S4 541 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 OSBP2Q969R2 916 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 DDRGK1Q96HY6 314 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 PNMA3Q9UL41 463 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 GABRQQ9UN88 632 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 BRCA2P51587 3418 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 NAV1Q8NEY1 1877 aa16.73■□□□□ 0.27
CLIP3-205ENST00000592017 MYPNQ86TC9 1320 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 KIAA0100Q14667 2235 aaKnown RBP16.72■□□□□ 0.27
CLIP3-205ENST00000592017 USP17L10C9JJH3 530 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 RAET1EQ8TD07 263 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 EMILIN3Q9NT22 766 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 ATP8A2Q9NTI2 1148 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 DDX60LQ5H9U9 1706 aaKnown RBP16.72■□□□□ 0.27
CLIP3-205ENST00000592017 ZSWIM8A7E2V4 1837 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 PHIPQ8WWQ0 1821 aa16.72■□□□□ 0.27
CLIP3-205ENST00000592017 MKI67P46013 3256 aaKnown RBP16.71■□□□□ 0.27
CLIP3-205ENST00000592017 TRIM6-TRIM34B2RNG4 842 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 C19orf81C9J6K1 198 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 M0R2C6 588 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 GPAA1O43292 621 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 HOXA7P31268 230 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-205ENST00000592017 PABPC4Q13310 644 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLIP3-205ENST00000592017 CERKLQ49MI3 558 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-205ENST00000592017 AMOTL1Q8IY63 956 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 EVI5LQ96CN4 794 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 P2RX7Q99572 595 aaKnown RBP16.71■□□□□ 0.27
CLIP3-205ENST00000592017 TMEM106CQ9BVX2 250 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 TMOD4Q9NZQ9 345 aa16.71■□□□□ 0.27
CLIP3-205ENST00000592017 PDE4DIPQ5VU43 2346 aa16.7■□□□□ 0.26
CLIP3-205ENST00000592017 CYP2D7A0A087X1C5 515 aa16.7■□□□□ 0.26
CLIP3-205ENST00000592017 GRK4P32298 578 aa16.7■□□□□ 0.26
CLIP3-205ENST00000592017 GUCY1A2P33402 732 aa16.7■□□□□ 0.26
CLIP3-205ENST00000592017 GCLCP48506 637 aaPredicted RBP16.7■□□□□ 0.26
CLIP3-205ENST00000592017 MTFR1Q15390 333 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms