RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 HOOK1Q9UJC3 728 aaKnown RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 ANAPC4Q9UJX5 808 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 FER1L6Q2WGJ9 1857 aa12.27□□□□□ -0.44
ZNF540-208ENST00000589857 DICER1Q9UPY3 1922 aaKnown RBP12.27□□□□□ -0.44
ZNF540-208ENST00000589857 MAGEB6P1A0A0J9YX57 407 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 CCDC85CA6NKD9 419 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 GSG1L2A8MUP6 293 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 BECN2A8MW95 431 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 NEMFO60524 1076 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 PPP6R2O75170 966 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 MAP2K2P36507 400 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 FOSBP53539 338 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 ANO1Q5XXA6 986 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 SPTY2D1Q68D10 685 aaPredicted RBP12.27□□□□□ -0.45
ZNF540-208ENST00000589857 CKAP2LQ8IYA6 745 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 IGDCC4Q8TDY8 1250 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 PIBF1Q8WXW3 757 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 TIGD1Q96MW7 591 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 GPR101Q96P66 508 aaPredicted RBP12.27□□□□□ -0.45
ZNF540-208ENST00000589857 RNF39Q9H2S5 420 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 ARMT1Q9H993 441 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 LY9Q9HBG7 655 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 CBX8Q9HC52 389 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 RAI14Q9P0K7 980 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 GJA3Q9Y6H8 435 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.27□□□□□ -0.45
ZNF540-208ENST00000589857 CCDC88AQ3V6T2 1871 aa12.27□□□□□ -0.45
ZNF540-208ENST00000589857 FMNL1O95466 1100 aaPredicted RBP12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CALM1P0DP23 149 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CALM2P0DP24 149 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CALM3P0DP25 149 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 IFNAR1P17181 557 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CMA1P23946 247 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 BCAMP50895 628 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 AKAP17AQ02040 695 aaKnown RBP12.26□□□□□ -0.45
ZNF540-208ENST00000589857 GUCY1B3Q02153 619 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CEBPZQ03701 1054 aaKnown RBP12.26□□□□□ -0.45
ZNF540-208ENST00000589857 SARM1Q6SZW1 724 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CYB5R4Q7L1T6 521 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CERS3Q8IU89 383 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 RPGRQ92834 1020 aaKnown RBP12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CCDC34Q96HJ3 373 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 SDF4Q9BRK5 362 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 NBPF3Q9H094 633 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 VPS33BQ9H267 617 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 TOMM22Q9NS69 142 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 CEP131Q9UPN4 1083 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 NEDD4P46934 1319 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 ZNF541Q9H0D2 1346 aa12.26□□□□□ -0.45
ZNF540-208ENST00000589857 DEXIO95424 95 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 PPARAQ07869 468 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 SLC39A14Q15043 492 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 RTN1Q16799 776 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 KRT40Q6A162 431 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 MICU3Q86XE3 530 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 LARGE2Q8N3Y3 721 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 ENGASEQ8NFI3 743 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 CAPNS2Q96L46 248 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 BPIFA3Q9BQP9 254 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 TRIM5Q9C035 493 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 EPB41L4AQ9HCS5 686 aaPredicted RBP12.25□□□□□ -0.45
ZNF540-208ENST00000589857 RBM28Q9NW13 759 aaKnown RBP12.25□□□□□ -0.45
ZNF540-208ENST00000589857 PCDHA7Q9UN72 937 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 BCORQ6W2J9 1755 aa12.25□□□□□ -0.45
ZNF540-208ENST00000589857 MYO1BO43795 1136 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 BMP15O95972 392 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 U2AF2P26368 475 aaKnown RBP eCLIP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 RPS8P62241 208 aaKnown RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 CACNB1Q02641 598 aaPredicted RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 CHAF1AQ13111 956 aaPredicted RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 GRM1Q13255 1194 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 CCDC178Q5BJE1 867 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 IQCA1Q86XH1 822 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 DRC7Q8IY82 874 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 NIM1KQ8IY84 436 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 FMR1NBQ8N0W7 255 aaPredicted RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 LCORLQ8N3X6 602 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 SUPT20HQ8NEM7 779 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 MRFAP1L1Q96HT8 127 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 RBM17Q96I25 401 aaKnown RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 CRNKL1Q9BZJ0 848 aaKnown RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 BRMS1Q9HCU9 246 aa12.24□□□□□ -0.45
ZNF540-208ENST00000589857 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 MORC2Q9Y6X9 1032 aaPredicted RBP12.24□□□□□ -0.45
ZNF540-208ENST00000589857 MYH7P12883 1935 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 LAMA4Q16363 1823 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 SCN7AQ01118 1682 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 SMTNL1A8MU46 457 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 NRDCO43847 1150 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 CUTAO60888 179 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 DTNBO60941 627 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 RGS19P49795 217 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 ZNF75DP51815 510 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 SNW1Q13573 536 aaKnown RBP12.23□□□□□ -0.45
ZNF540-208ENST00000589857 RILPL1Q5EBL4 403 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 FBXO33Q7Z6M2 555 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 ELOA2Q8IYF1 753 aaPredicted RBP12.23□□□□□ -0.45
ZNF540-208ENST00000589857 HHIPL1Q96JK4 782 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 PRIMPOLQ96LW4 560 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms