RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 NPAS4Q8IUM7 802 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 HID1Q8IV36 788 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 GAL3ST3Q96A11 431 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 LIN37Q96GY3 246 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-203ENST00000588323 KIRREL1Q96J84 757 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 FRMD6Q96NE9 622 aa6.27□□□□□ -1.41
VPS4B-203ENST00000588323 H3BS24 57 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 LDHBP07195 334 aaKnown RBP6.26□□□□□ -1.41
VPS4B-203ENST00000588323 P4HBP07237 508 aaKnown RBP6.26□□□□□ -1.41
VPS4B-203ENST00000588323 LMNB1P20700 586 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 NKG7Q16617 165 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 FYB2Q5VWT5 728 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 LETMD1Q6P1Q0 360 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 MPZL3Q6UWV2 235 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 KRTAP4-7Q9BYR0 210 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 CAPN6Q9Y6Q1 641 aa6.26□□□□□ -1.41
VPS4B-203ENST00000588323 CNTNAP4Q9C0A0 1308 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 CBX7O95931 251 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 GLI1P08151 1106 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 EIF4BP23588 611 aaKnown RBP6.25□□□□□ -1.41
VPS4B-203ENST00000588323 GDNFP39905 211 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 KCNA1Q09470 495 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 PRAMEF13Q5VWM6 474 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 CCDC120Q96HB5 630 aa6.25□□□□□ -1.41
VPS4B-203ENST00000588323 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.24□□□□□ -1.41
VPS4B-203ENST00000588323 CST3P01034 146 aaPredicted RBP6.24□□□□□ -1.41
VPS4B-203ENST00000588323 CYP7A1P22680 504 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 GRK4P32298 578 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 RAP1GAPP47736 663 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 CDK8P49336 464 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 CCDC85BQ15834 202 aaPredicted RBP6.24□□□□□ -1.41
VPS4B-203ENST00000588323 FBLN7Q53RD9 439 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 TMEM67Q5HYA8 995 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 THAP5Q7Z6K1 395 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 RIN3Q8TB24 985 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 XAGE3Q8WTP9 111 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 COX4I2Q96KJ9 171 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 PPP1R16BQ96T49 567 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 ST14Q9Y5Y6 855 aa6.24□□□□□ -1.41
VPS4B-203ENST00000588323 GNA15P30679 374 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 KIR3DL1P43629 444 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 RPS26P62854 115 aaKnown RBP6.23□□□□□ -1.41
VPS4B-203ENST00000588323 SPOCD1Q6ZMY3 1216 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 PRR23BQ6ZRT6 265 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 UBE2FQ969M7 185 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 TOX2Q96NM4 488 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 C19orf73Q9NVV2 129 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 ZSWIM5Q9P217 1185 aa6.23□□□□□ -1.41
VPS4B-203ENST00000588323 SEPT6Q14141 434 aa6.22□□□□□ -1.41
VPS4B-203ENST00000588323 CDH24Q86UP0 819 aa6.22□□□□□ -1.41
VPS4B-203ENST00000588323 ALPK1Q96QP1 1244 aa6.22□□□□□ -1.41
VPS4B-203ENST00000588323 PCDHB5Q9Y5E4 795 aa6.22□□□□□ -1.41
VPS4B-203ENST00000588323 TACC3Q9Y6A5 838 aa6.22□□□□□ -1.41
VPS4B-203ENST00000588323 TSPAN15O95858 294 aa6.21□□□□□ -1.42
VPS4B-203ENST00000588323 RAC2P15153 192 aa6.21□□□□□ -1.42
VPS4B-203ENST00000588323 KRTAP19-4Q3LI73 84 aa6.21□□□□□ -1.42
VPS4B-203ENST00000588323 SYDE1Q6ZW31 735 aaPredicted RBP6.21□□□□□ -1.42
VPS4B-203ENST00000588323 SLAMF8Q9P0V8 285 aa6.21□□□□□ -1.42
VPS4B-203ENST00000588323 GFRA2O00451 464 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 PRPF40AO75400 957 aaKnown RBP6.2□□□□□ -1.42
VPS4B-203ENST00000588323 PGRP06401 933 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 ETV3P41162 512 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 TNK2Q07912 1038 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 MAP3K11Q16584 847 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 AGMOQ6ZNB7 445 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 ANKLE2Q86XL3 938 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 ZSCAN18Q8TBC5 510 aaPredicted RBP6.2□□□□□ -1.42
VPS4B-203ENST00000588323 PIWIL2Q8TC59 973 aaKnown RBP6.2□□□□□ -1.42
VPS4B-203ENST00000588323 DPH2Q9BQC3 489 aaPredicted RBP6.2□□□□□ -1.42
VPS4B-203ENST00000588323 MIR1-1HGQ9H1L0 117 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 TJP2Q9UDY2 1190 aa6.2□□□□□ -1.42
VPS4B-203ENST00000588323 LIG3P49916 1009 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 PDE4BQ07343 736 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 SLC6A19Q695T7 634 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 TMPRSS7Q7RTY8 843 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 TTC6Q86TZ1 520 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 MRPL41Q8IXM3 137 aaKnown RBP6.19□□□□□ -1.42
VPS4B-203ENST00000588323 FBXO15Q8NCQ5 510 aaPredicted RBP6.19□□□□□ -1.42
VPS4B-203ENST00000588323 TMEM87BQ96K49 555 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 DIRC2Q96SL1 478 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 NSUN3Q9H649 340 aaKnown RBP6.19□□□□□ -1.42
VPS4B-203ENST00000588323 AK5Q9Y6K8 562 aa6.19□□□□□ -1.42
VPS4B-203ENST00000588323 NFIBO00712 420 aa6.18□□□□□ -1.42
VPS4B-203ENST00000588323 CFPP27918 469 aa6.18□□□□□ -1.42
VPS4B-203ENST00000588323 DIEXFQ68CQ4 756 aaKnown RBP6.18□□□□□ -1.42
VPS4B-203ENST00000588323 CILP2Q8IUL8 1156 aa6.18□□□□□ -1.42
VPS4B-203ENST00000588323 ABHD4Q8TB40 342 aa6.18□□□□□ -1.42
VPS4B-203ENST00000588323 RPL6Q02878 288 aaKnown RBP6.17□□□□□ -1.42
VPS4B-203ENST00000588323 TSNAXIP1Q2TAA8 658 aa6.17□□□□□ -1.42
VPS4B-203ENST00000588323 LCE4AQ5TA78 99 aa6.17□□□□□ -1.42
VPS4B-203ENST00000588323 LRRC56Q8IYG6 542 aaPredicted RBP6.17□□□□□ -1.42
VPS4B-203ENST00000588323 DUSP9Q99956 384 aaKnown RBP6.17□□□□□ -1.42
VPS4B-203ENST00000588323 TMEM59LQ9UK28 342 aa6.17□□□□□ -1.42
VPS4B-203ENST00000588323 DNAJC25-GNG10A0A024R161 153 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 PATL2C9JE40 543 aaKnown RBP6.16□□□□□ -1.42
VPS4B-203ENST00000588323 ESR1P03372 595 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 C1QTNF9P0C862 333 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 RLBP1P12271 317 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 HK2P52789 917 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 RALGPS1Q5JS13 557 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms