RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 ALPK3Q96L96 1907 aa23.66■■□□□ 1.38
TRAF4-216ENST00000586813 TRIOBPQ9H2D6 2365 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 GDF11O95390 407 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 CYP7A1P22680 504 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 DYNLL1P63167 89 aaKnown RBP23.65■■□□□ 1.38
TRAF4-216ENST00000586813 SHROOM1Q2M3G4 852 aaPredicted RBP23.65■■□□□ 1.38
TRAF4-216ENST00000586813 CHRDL2Q6WN34 429 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 DEFB118Q96PH6 123 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 GINM1Q9NU53 330 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 TMOD4Q9NZQ9 345 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 MORF4L1Q9UBU8 362 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 ZBTB21Q9ULJ3 1066 aa23.65■■□□□ 1.38
TRAF4-216ENST00000586813 IDH1O75874 414 aaKnown RBP23.64■■□□□ 1.37
TRAF4-216ENST00000586813 HLA-DOAP06340 250 aa23.64■■□□□ 1.37
TRAF4-216ENST00000586813 IRX3P78415 501 aaPredicted RBP23.64■■□□□ 1.37
TRAF4-216ENST00000586813 CEP85Q6P2H3 762 aa23.64■■□□□ 1.37
TRAF4-216ENST00000586813 NAV1Q8NEY1 1877 aa23.64■■□□□ 1.37
TRAF4-216ENST00000586813 C19orf81C9J6K1 198 aa23.63■■□□□ 1.37
TRAF4-216ENST00000586813 TFRCP02786 760 aaKnown RBP23.63■■□□□ 1.37
TRAF4-216ENST00000586813 CAPN2P17655 700 aa23.63■■□□□ 1.37
TRAF4-216ENST00000586813 HOXA7P31268 230 aaPredicted RBP23.63■■□□□ 1.37
TRAF4-216ENST00000586813 RANBP2P49792 3224 aaKnown RBP23.63■■□□□ 1.37
TRAF4-216ENST00000586813 USP17L10C9JJH3 530 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 HMGCRP04035 888 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 CERS3Q8IU89 383 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 MIGA1Q8NAN2 632 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 CRISPLD2Q9H0B8 497 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.62■■□□□ 1.379e-7■■■□□ 14.7
TRAF4-216ENST00000586813 GJD2Q9UKL4 321 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 NDUFB9Q9Y6M9 179 aa23.62■■□□□ 1.37
TRAF4-216ENST00000586813 ERC1Q8IUD2 1116 aa23.61■■□□□ 1.37
TRAF4-216ENST00000586813 MIER1Q8N108 512 aa23.61■■□□□ 1.37
TRAF4-216ENST00000586813 MAGEB6Q8N7X4 407 aa23.61■■□□□ 1.37
TRAF4-216ENST00000586813 EXOC6BQ9Y2D4 811 aa23.61■■□□□ 1.37
TRAF4-216ENST00000586813 NR2E3Q9Y5X4 410 aa23.61■■□□□ 1.37
TRAF4-216ENST00000586813 HERVK_113P62684 666 aa23.6■■□□□ 1.37
TRAF4-216ENST00000586813 P2RX7Q99572 595 aaKnown RBP23.6■■□□□ 1.37
TRAF4-216ENST00000586813 ANTXR1Q9H6X2 564 aa23.6■■□□□ 1.37
TRAF4-216ENST00000586813 RBM27Q9P2N5 1060 aaKnown RBP23.6■■□□□ 1.37
TRAF4-216ENST00000586813 SZT2Q5T011 3432 aa23.6■■□□□ 1.37
TRAF4-216ENST00000586813 USP5P45974 858 aa23.59■■□□□ 1.37
TRAF4-216ENST00000586813 AACSQ86V21 672 aa23.59■■□□□ 1.37
TRAF4-216ENST00000586813 TXNRD2Q9NNW7 524 aa23.59■■□□□ 1.37
TRAF4-216ENST00000586813 PEX10O60683 326 aa23.58■■□□□ 1.37
TRAF4-216ENST00000586813 GH2P01242 217 aa23.58■■□□□ 1.37
TRAF4-216ENST00000586813 MAP3K12Q12852 859 aa23.58■■□□□ 1.37
TRAF4-216ENST00000586813 TMED8Q6PL24 325 aaPredicted RBP23.58■■□□□ 1.37
TRAF4-216ENST00000586813 GPRC5AQ8NFJ5 357 aa23.58■■□□□ 1.37
TRAF4-216ENST00000586813 PANK1Q8TE04 598 aa23.58■■□□□ 1.37
TRAF4-216ENST00000586813 ZBED9Q6R2W3 1325 aa23.58■■□□□ 1.36
TRAF4-216ENST00000586813 TRIM32Q13049 653 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 TATDN1Q6P1N9 297 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 TRIB2Q92519 343 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 EHD4Q9H223 541 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 EMILIN3Q9NT22 766 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 SERPINB13Q9UIV8 391 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 RPTORQ8N122 1335 aa23.57■■□□□ 1.36
TRAF4-216ENST00000586813 EVI5O60447 810 aa23.56■■□□□ 1.36
TRAF4-216ENST00000586813 USP17L2Q6R6M4 530 aa23.56■■□□□ 1.36
TRAF4-216ENST00000586813 GTF3C2Q8WUA4 911 aaPredicted RBP23.56■■□□□ 1.36
TRAF4-216ENST00000586813 SOCS4Q8WXH5 440 aa23.56■■□□□ 1.36
TRAF4-216ENST00000586813 PAWRQ96IZ0 340 aaKnown RBP23.56■■□□□ 1.36
TRAF4-216ENST00000586813 PRO3102Q9H379 93 aa23.56■■□□□ 1.36
TRAF4-216ENST00000586813 HMX1Q9NP08 348 aaPredicted RBP23.56■■□□□ 1.36
TRAF4-216ENST00000586813 RBPJLQ9UBG7 517 aa23.56■■□□□ 1.36
TRAF4-216ENST00000586813 CYP2B6P20813 491 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 ERVK-9P63128 1117 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 ERVK-24P63145 666 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 DIS3LQ8TF46 1054 aaKnown RBP23.55■■□□□ 1.36
TRAF4-216ENST00000586813 FEZ1Q99689 392 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 IL1RAPL2Q9NP60 686 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 MYH8P13535 1937 aa23.55■■□□□ 1.36
TRAF4-216ENST00000586813 MAPK4P31152 587 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 HSP90AB4PQ58FF6 505 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 NECAB2Q7Z6G3 386 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 TTC6Q86TZ1 520 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 ANKLE1Q8NAG6 615 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 C12orf42Q96LP6 360 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 NUDT12Q9BQG2 462 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 RIOK1Q9BRS2 568 aaKnown RBP23.54■■□□□ 1.36
TRAF4-216ENST00000586813 FRMPD3Q5JV73 1810 aa23.54■■□□□ 1.36
TRAF4-216ENST00000586813 XRCC5P13010 732 aaKnown RBP23.53■■□□□ 1.36
TRAF4-216ENST00000586813 ZYXQ15942 572 aaKnown RBP23.53■■□□□ 1.36
TRAF4-216ENST00000586813 POTEEQ6S8J3 1075 aa23.53■■□□□ 1.36
TRAF4-216ENST00000586813 RHPN1Q8TCX5 695 aa23.53■■□□□ 1.36
TRAF4-216ENST00000586813 PAGR1Q9BTK6 254 aa23.53■■□□□ 1.36
TRAF4-216ENST00000586813 PORCNQ9H237 461 aa23.53■■□□□ 1.36
TRAF4-216ENST00000586813 PDE3AQ14432 1141 aa23.52■■□□□ 1.36
TRAF4-216ENST00000586813 RAB3GAP1Q15042 981 aa23.52■■□□□ 1.36
TRAF4-216ENST00000586813 TTF1Q15361 905 aaPredicted RBP23.52■■□□□ 1.36
TRAF4-216ENST00000586813 Q3C1V9 767 aa23.52■■□□□ 1.36
TRAF4-216ENST00000586813 CERKLQ49MI3 558 aaPredicted RBP23.52■■□□□ 1.36
TRAF4-216ENST00000586813 MAP3K21Q5TCX8 1036 aa23.52■■□□□ 1.36
TRAF4-216ENST00000586813 PRKAR2AP13861 404 aaKnown RBP23.51■■□□□ 1.35
TRAF4-216ENST00000586813 PLCD1P51178 756 aa23.51■■□□□ 1.35
TRAF4-216ENST00000586813 ABCB5Q2M3G0 1257 aa23.51■■□□□ 1.35
TRAF4-216ENST00000586813 DIEXFQ68CQ4 756 aaKnown RBP23.51■■□□□ 1.35
TRAF4-216ENST00000586813 GPR142Q7Z601 462 aa23.51■■□□□ 1.35
TRAF4-216ENST00000586813 CCAR1Q8IX12 1150 aaKnown RBP23.51■■□□□ 1.35
TRAF4-216ENST00000586813 KIAA1683Q9H0B3 1180 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms