RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 PRKAB2O43741 272 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 GH2P01242 217 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 PLCD1P51178 756 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 SLFNL1Q499Z3 407 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 CCDC84Q86UT8 332 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-203ENST00000586457 METTL16Q86W50 562 aaKnown RBP13.05□□□□□ -0.32
CLIP3-203ENST00000586457 CHD1LQ86WJ1 897 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 PROCA1Q8NCQ7 364 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-203ENST00000586457 CD99L2Q8TCZ2 262 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 OTUD7AQ8TE49 926 aaPredicted RBP13.05□□□□□ -0.32
CLIP3-203ENST00000586457 RILPL2Q969X0 211 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 EVI5LQ96CN4 794 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 PUS7LQ9H0K6 701 aaKnown RBP13.05□□□□□ -0.32
CLIP3-203ENST00000586457 TAOK2Q9UL54 1235 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 MINDY4BA8MYZ0 360 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 USP17L12C9JPN9 530 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 USP17L21D6R901 530 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 FMNL1O95466 1100 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-203ENST00000586457 IGHDP01880 384 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 HOXD10P28358 340 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 TDO2P48775 406 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 PDE1AP54750 535 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 HMGCS2P54868 508 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 TATDN1Q6P1N9 297 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 FBXO46Q6PJ61 603 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-203ENST00000586457 SMC5Q8IY18 1101 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 PI4K2BQ8TCG2 481 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 WDR18Q9BV38 432 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 MKNK2Q9HBH9 465 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 ZNF287Q9HBT7 754 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.04□□□□□ -0.32
CLIP3-203ENST00000586457 CPA4Q9UI42 421 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 ZBTB21Q9ULJ3 1066 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 AGTPBP1Q9UPW5 1226 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 SLC45A1Q9Y2W3 748 aa13.04□□□□□ -0.32
CLIP3-203ENST00000586457 ECM2O94769 699 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 SLC3A2P08195 630 aaKnown RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 CYP2C8P10632 490 aa13.03□□□□□ -0.32
CLIP3-203ENST00000586457 BACE1P56817 501 aa13.03□□□□□ -0.32
CLIP3-203ENST00000586457 IRX3P78415 501 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 MTMR2Q13614 643 aa13.03□□□□□ -0.32
CLIP3-203ENST00000586457 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 STRBPQ96SI9 672 aaKnown RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 ARPP21Q9UBL0 812 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-203ENST00000586457 STAP2Q9UGK3 403 aa13.03□□□□□ -0.32
CLIP3-203ENST00000586457 MYH1P12882 1939 aa13.03□□□□□ -0.32
CLIP3-203ENST00000586457 PATL2C9JE40 543 aaKnown RBP13.02□□□□□ -0.33
CLIP3-203ENST00000586457 GPAA1O43292 621 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 GNRH1P01148 92 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 USP14P54578 494 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 NUCB1Q02818 461 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 RRP1BQ14684 758 aaKnown RBP13.02□□□□□ -0.33
CLIP3-203ENST00000586457 C12orf60Q5U649 245 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 GPAT2Q6NUI2 795 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 GIMAP6Q6P9H5 292 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L2Q6R6M4 530 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 DOCK1Q14185 1865 aa13.02□□□□□ -0.33
CLIP3-203ENST00000586457 CHGBP05060 677 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 CYP2D6P10635 497 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 LACTBP83111 547 aaPredicted RBP13.01□□□□□ -0.33
CLIP3-203ENST00000586457 ZYXQ15942 572 aaKnown RBP13.01□□□□□ -0.33
CLIP3-203ENST00000586457 OTOP1Q7RTM1 612 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 NBPF11Q86T75 865 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 STK11IPQ8N1F8 1099 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 CCDC17Q96LX7 622 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 NAPBQ9H115 298 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 SH2D4AQ9H788 454 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 DNAJC18Q9H819 358 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 ARHGEF10LQ9HCE6 1279 aa13.01□□□□□ -0.33
CLIP3-203ENST00000586457 CWC22Q9HCG8 908 aaKnown RBP13.01□□□□□ -0.33
CLIP3-203ENST00000586457 FOCADQ5VW36 1801 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 SHMT1P34896 483 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 PSMC4P43686 418 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 GCLCP48506 637 aaPredicted RBP13□□□□□ -0.33
CLIP3-203ENST00000586457 CDK8P49336 464 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 MFAP1P55081 439 aaKnown RBP13□□□□□ -0.33
CLIP3-203ENST00000586457 FCGRTP55899 365 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 ATP2B2Q01814 1243 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 MOGSQ13724 837 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 SH3D19Q5HYK7 790 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 TREML2Q5T2D2 321 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 CTR9Q6PD62 1173 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 C17orf99Q6UX52 265 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 TMEM179Q6ZVK1 233 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 TICAM2Q86XR7 235 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 ZNF444Q8N0Y2 327 aaPredicted RBP13□□□□□ -0.33
CLIP3-203ENST00000586457 DYNLL2Q96FJ2 89 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 HPS5Q9UPZ3 1129 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 PTPN22Q9Y2R2 807 aa13□□□□□ -0.33
CLIP3-203ENST00000586457 CDK5RAP2Q96SN8 1893 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 CYP2D7A0A087X1C5 515 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 GSG1L2A8MUP6 293 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 M0R2C6 588 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 RAD21O60216 631 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 PRMT2P55345 433 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 PDE4BQ07343 736 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 SEPT2Q15019 361 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 ZMYM1Q5SVZ6 1142 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 IFNL3Q8IZI9 196 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms