RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 SCRN1Q12765 414 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 STK3Q13188 491 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 PKP1Q13835 747 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 COL9A3Q14050 684 aaPredicted RBP12.17□□□□□ -0.46
LIG3-203ENST00000585370 PPP2R5BQ15173 497 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 CSPP1Q1MSJ5 1256 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 NBPF9Q3BBW0 867 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 CPLX2Q6PUV4 134 aaKnown RBP12.17□□□□□ -0.46
LIG3-203ENST00000585370 SYNE3Q6ZMZ3 975 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 FAM184AQ8NB25 1140 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 IGDCC4Q8TDY8 1250 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 ESR2Q92731 530 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 CSRNP1Q96S65 589 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 LRRC2Q9BYS8 371 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 AATFQ9NY61 560 aaKnown RBP eCLIP12.17□□□□□ -0.46
LIG3-203ENST00000585370 MYH13Q9UKX3 1938 aa12.17□□□□□ -0.46
LIG3-203ENST00000585370 MROH7-TTC4A0A0A0MT08 1334 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 PITPNM2Q9BZ72 1349 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 GPR75-ASB3A0A0A6YYF3 556 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 MINDY4BA8MYZ0 360 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 SH2B2O14492 632 aaPredicted RBP12.16□□□□□ -0.46
LIG3-203ENST00000585370 CDKL5O76039 1030 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 SLC10A3P09131 477 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 CTDSPL2Q05D32 466 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 CCDC178Q5BJE1 867 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 MFSD14BQ5SR56 506 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 STRIP1Q5VSL9 837 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 PRAMEF18Q5VWM3 479 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 CTR9Q6PD62 1173 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 MOB2Q70IA6 237 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 SDR42E1Q8WUS8 393 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 MRIQ9BWK5 157 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 DCP1AQ9NPI6 582 aaPredicted RBP12.16□□□□□ -0.46
LIG3-203ENST00000585370 RNF186Q9NXI6 227 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 ZSWIM5Q9P217 1185 aa12.16□□□□□ -0.46
LIG3-203ENST00000585370 MAST2Q6P0Q8 1798 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 KLF18A0A0U1RQI7 1052 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 USP17L12C9JPN9 530 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 USP17L21D6R901 530 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 WNT10BO00744 389 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 IFIT3O14879 490 aaKnown RBP12.15□□□□□ -0.46
LIG3-203ENST00000585370 ORC4O43929 436 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 TRPA1O75762 1119 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 F13A1P00488 732 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 USP5P45974 858 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 RGS19P49795 217 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 PDE4BQ07343 736 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 DGKZQ13574 1117 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 TMEM67Q5HYA8 995 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 MCTP1Q6DN14 999 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 CYB5R4Q7L1T6 521 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 CHST3Q7LGC8 479 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 ZNF287Q9HBT7 754 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 SAGE1Q9NXZ1 904 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 MTMR6Q9Y217 621 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 LAMA4Q16363 1823 aa12.15□□□□□ -0.46
LIG3-203ENST00000585370 GAKO14976 1311 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 NEDD4P46934 1319 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 CCDC196A0A1B0GTZ2 297 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 CCDC69A6NI79 296 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 CPLX1O14810 134 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 KDM4AO75164 1064 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 NCLP19338 710 aaKnown RBP12.14□□□□□ -0.47
LIG3-203ENST00000585370 FKBP1BP68106 108 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 GTF2IP78347 998 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 NFXL1Q6ZNB6 911 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 IQCA1Q86XH1 822 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 RASAL3Q86YV0 1011 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 OGFOD1Q8N543 542 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 NSUN7Q8NE18 718 aaKnown RBP12.14□□□□□ -0.47
LIG3-203ENST00000585370 FBXW7Q969H0 707 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 UBAC1Q9BSL1 405 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 ZSCAN16Q9H4T2 348 aaPredicted RBP12.14□□□□□ -0.47
LIG3-203ENST00000585370 TOMM22Q9NS69 142 aa12.14□□□□□ -0.47
LIG3-203ENST00000585370 NAP1L2Q9ULW6 460 aaPredicted RBP12.14□□□□□ -0.47
LIG3-203ENST00000585370 TNRC18O15417 2968 aaPredicted RBP12.14□□□□□ -0.47
LIG3-203ENST00000585370 GOLGA8BA8MQT2 603 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 UBE2Q2LH0YL09 131 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 H3BQV1 296 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 ZBTB43O43298 467 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 HDLBPQ00341 1268 aaKnown RBP12.13□□□□□ -0.47
LIG3-203ENST00000585370 GSE1Q14687 1217 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 WTAPQ15007 396 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 KLHL40Q2TBA0 621 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 RRP12Q5JTH9 1297 aaKnown RBP12.13□□□□□ -0.47
LIG3-203ENST00000585370 C12orf60Q5U649 245 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 HHIPL2Q6UWX4 724 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 LY9Q9HBG7 655 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 LMBRD1Q9NUN5 540 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 BRPF3Q9ULD4 1205 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 SLC12A7Q9Y666 1083 aa12.13□□□□□ -0.47
LIG3-203ENST00000585370 ZNF646O15015 1829 aaPredicted RBP12.13□□□□□ -0.47
LIG3-203ENST00000585370 MYO3BQ8WXR4 1341 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 PTPDC1A2A3K4 754 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 VPS37CA5D8V6 355 aaPredicted RBP12.12□□□□□ -0.47
LIG3-203ENST00000585370 MBD3O95983 291 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 CALM1P0DP23 149 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 CALM2P0DP24 149 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 CALM3P0DP25 149 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 BTDP43251 543 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms