RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ERC2O15083 957 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 ECM2O94769 699 aaPredicted RBP14.92□□□□□ -0.02
SS18-225ENST00000585121 MBD4O95243 580 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 BCRP11274 1271 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 FCGRTP55899 365 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 BACE1P56817 501 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 AAMPQ13685 434 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 LRRFIP1Q32MZ4 808 aaKnown RBP14.92□□□□□ -0.02
SS18-225ENST00000585121 LCORLQ8N3X6 602 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 ARHGAP39Q9C0H5 1083 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 PTCH2Q9Y6C5 1203 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 GH2P01242 217 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 PLCD1P51178 756 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 CAP1Q01518 475 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 MTMR2Q13614 643 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 TREML2Q5T2D2 321 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 TATDN1Q6P1N9 297 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 SDR42E1Q8WUS8 393 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 ARMC5Q96C12 935 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 DCP1AQ9NPI6 582 aaPredicted RBP14.92□□□□□ -0.02
SS18-225ENST00000585121 ATP8A2Q9NTI2 1148 aa14.92□□□□□ -0.02
SS18-225ENST00000585121 GCLCP48506 637 aaPredicted RBP14.91□□□□□ -0.02
SS18-225ENST00000585121 IRX3P78415 501 aaPredicted RBP14.91□□□□□ -0.02
SS18-225ENST00000585121 ABCB5Q2M3G0 1257 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 RAET1EQ8TD07 263 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 TRIM47Q96LD4 638 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 TMEM106CQ9BVX2 250 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 SRRDQ9UH36 339 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 TAOK2Q9UL54 1235 aa14.91□□□□□ -0.02
SS18-225ENST00000585121 TTC41PQ6P2S7 1318 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 JAG1P78504 1218 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 RAB3GAP1Q15042 981 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 USP17L2Q6R6M4 530 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 KBTBD3Q8NAB2 608 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 FEZ1Q99689 392 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 SWAP70Q9UH65 585 aa14.9□□□□□ -0.02
SS18-225ENST00000585121 MYPNQ86TC9 1320 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 ZFYP08048 801 aaPredicted RBP14.89□□□□□ -0.03
SS18-225ENST00000585121 USP14P54578 494 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 TSHZ3Q63HK5 1081 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 ANKRD13CQ8N6S4 541 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 GCC1Q96CN9 775 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 ASCC2Q9H1I8 757 aaPredicted RBP14.89□□□□□ -0.03
SS18-225ENST00000585121 SLC4A4Q9Y6R1 1079 aa14.89□□□□□ -0.03
SS18-225ENST00000585121 FOCADQ5VW36 1801 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 MPHOSPH10O00566 681 aaKnown RBP14.88□□□□□ -0.03
SS18-225ENST00000585121 PRKAB2O43741 272 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 GLRX3O76003 335 aaKnown RBP14.88□□□□□ -0.03
SS18-225ENST00000585121 HOXA7P31268 230 aaPredicted RBP14.88□□□□□ -0.03
SS18-225ENST00000585121 SHMT1P34896 483 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 FAM110CQ1W6H9 321 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 SHROOM1Q2M3G4 852 aaPredicted RBP14.88□□□□□ -0.03
SS18-225ENST00000585121 SLFNL1Q499Z3 407 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 ANKRD45Q5TZF3 282 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 ZNF333Q96JL9 665 aa14.88□□□□□ -0.03
SS18-225ENST00000585121 MYH1P12882 1939 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 TNPO2O14787 897 aaKnown RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 RNF113AO15541 343 aaKnown RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 CENPBP07199 599 aaPredicted RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 CTGFP29279 349 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 GABPAQ06546 454 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 HDAC1Q13547 482 aaPredicted RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 COA7Q96BR5 231 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 PUS7LQ9H0K6 701 aaKnown RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 CDK5RAP2Q96SN8 1893 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 SIPA1L1O43166 1804 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 PHIPQ8WWQ0 1821 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 CYP2D6P10635 497 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 MX1P20591 662 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 SH3TC2Q8TF17 1288 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 GTF3C2Q8WUA4 911 aaPredicted RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 APPBP2Q92624 585 aa14.87□□□□□ -0.03
SS18-225ENST00000585121 BIN2Q9UBW5 565 aaPredicted RBP14.87□□□□□ -0.03
SS18-225ENST00000585121 HTTP42858 3142 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 USP17L12C9JPN9 530 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 USP17L21D6R901 530 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 GRK4P32298 578 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 PRKCZQ05513 592 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 ZYXQ15942 572 aaKnown RBP14.86□□□□□ -0.03
SS18-225ENST00000585121 KIAA1683Q9H0B3 1180 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 RWDD1Q9H446 243 aaPredicted RBP14.86□□□□□ -0.03
SS18-225ENST00000585121 EMILIN3Q9NT22 766 aa14.86□□□□□ -0.03
SS18-225ENST00000585121 USP17L15C9J2P7 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L13C9JLJ4 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L11C9JVI0 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L18D6R9N7 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L22D6RA61 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L17D6RBQ6 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L19D6RCP7 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L20D6RJB6 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 CHGBP05060 677 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 GNAT2P19087 354 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 HERVK_113P62684 666 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 UBXN2AP68543 259 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 USP17L24Q0WX57 530 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 SEPT2Q15019 361 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 C12orf60Q5U649 245 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 TMEM179Q6ZVK1 233 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 CCAR1Q8IX12 1150 aaKnown RBP14.85□□□□□ -0.03
SS18-225ENST00000585121 SLAIN1Q8ND83 568 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms