RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	SALL1	Q9NSC2	1324 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ECM2	O94769	699 aa	Predicted RBP	13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PDE8B	O95263	885 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	NTSR2	O95665	410 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PHKA1	P46020	1223 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	E2F5	Q15329	346 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZRSR1	Q15695	479 aa	Known RBP	13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SPECC1	Q5M775	1068 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TBC1D10C	Q8IV04	446 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LRRC27	Q9C0I9	530 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	WWC3	Q9ULE0	1092 aa		13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.27	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	RIC1	Q4ADV7	1423 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCDC194	A0A1B0GVG4	234 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	TRAPPC3L	Q5T215	181 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	KRT27	Q7Z3Y8	459 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FAM210A	Q96ND0	272 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	XPO4	Q9C0E2	1151 aa	Known RBP	13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SUDS3	Q9H7L9	328 aa	Predicted RBP	13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	GPR108	Q9NPR9	543 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RCOR1	Q9UKL0	485 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RFX7	Q2KHR2	1363 aa		13.27	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCDC189	A1A4V9	331 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ATP1A3	P13637	1013 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCZ1B	P86790	482 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCZ1	P86791	482 aa	Predicted RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CYB5R4	Q7L1T6	521 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	AGXT2	Q9BYV1	514 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CTNNA3	Q9UI47	895 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	KLF15	Q9UIH9	416 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SMIM22	K7EJ46	135 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RPS6KA4	O75676	772 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FAM160A1	Q05DH4	1040 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	KMT5B	Q4FZB7	885 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SLC9C2	Q5TAH2	1124 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SYT10	Q6XYQ8	523 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PHKB	Q93100	1093 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RANBP17	Q9H2T7	1088 aa	Known RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	VASP	P50552	380 aa	Predicted RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CEP57L1	Q8IYX8	460 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ENGASE	Q8NFI3	743 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NCAPG	Q9BPX3	1015 aa		13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	DIS3	Q9Y2L1	958 aa	Known RBP	13.26	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CFAP69	A5D8W1	941 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FAM200B	P0CF97	657 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NYAP1	Q6ZVC0	841 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	C8orf76	Q96K31	380 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	EPC1	Q9H2F5	836 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	TACC3	Q9Y6A5	838 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	BCAM	P50895	628 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	IMMT	Q16891	758 aa	Known RBP	13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ERCC6L	Q2NKX8	1250 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCDC102B	Q68D86	513 aa		13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NAA16	Q6N069	864 aa	Predicted RBP	13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ORC3	Q9UBD5	711 aa	Predicted RBP	13.25	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063		B4E1Z4	1266 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CPLX1	O14810	134 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FBXO38	Q6PIJ6	1188 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MRPS27	Q92552	414 aa	Known RBP	13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZNF396	Q96N95	335 aa	Predicted RBP	13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ANO10	Q9NW15	660 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NARF	Q9UHQ1	456 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ATP2B1	P20020	1258 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CCAR2	Q8N163	923 aa	Known RBP	13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	APPBP2	Q92624	585 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CLIC6	Q96NY7	704 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	LLPH	Q9BRT6	129 aa	Known RBP	13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	EFCC1	Q9HA90	598 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	JAG2	Q9Y219	1238 aa		13.24	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ATRN	O75882	1429 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZNF532	Q9HCE3	1301 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CTDSPL2	Q05D32	466 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CHRND	Q07001	517 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PUM3	Q15397	648 aa	Known RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ARMCX5	Q6P1M9	558 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	TPTE2	Q6XPS3	522 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MICU3	Q86XE3	530 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	VPS37D	Q86XT2	251 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	HOMER1	Q86YM7	354 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ANKRD18A	Q8IVF6	992 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CMTR1	Q8N1G2	835 aa	Known RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CELF1	Q92879	486 aa	Known RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NLRP3	Q96P20	1036 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CXorf56	Q9H5V9	222 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NEDD4	P46934	1319 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZNF213	O14771	459 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	IPO7	O95373	1038 aa	Known RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CDC27	P30260	824 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ABCD1	P33897	745 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	C16orf87	Q6PH81	154 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SLC51A	Q86UW1	340 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	DPF2	Q92785	391 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZNF274	Q96GC6	653 aa	Predicted RBP	13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZKSCAN3	Q9BRR0	538 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms